Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00215 ATGGCCGCCGGCATAGACATGTCCCTCGACGACATTATCAAGAGGTCCACCTCCTCCGCCGCAGTTCGCCGCCGACCCTACATTCCCGGGCCAGAACGCCGCTTCGCCGTTCGCAACCCGGCCAGACCGATGGCTTACTATATCCCTCAGGATTTTGAGATGAAACAGGGAAGGCAAGTGTGGCAAGGAAGCATGGCTCCAGAAATGGTTTTGGATGATAGCGCTTCGGCTGAGACTGGCACCAAACTGTATATATCTAACTTGGACTATGGGGTTTCCAGTGAAGATATTAAGCTGCTTTTTTCTGAAGAGGGTGAGTTGAAAAGACACTGCATTCATCATGACAAGAGTGGGAGATCAAAAGGAACTGCTGAAGTTGTCTTTACTAGGCACTCTGATGCCTTAGCAGCTATCAAGAGATACAACAATATGAGGCTTGATGGAAAGCCATTGAAGATTGAGCTTGTTGGAACAAGTTTCGTTACTCCTCCTGTTATGCCCCTTTATCAAAATAGCTTACTGGGAAGACCAAACGAACAAGGAAAGGTTGGAGGTAGCAGGTTCTATAATGGCTTTGCACGTGGCCCTCTTCCAAGGGGCCATAGAGAAGAGACAGGCCGTATTCGGACGGGATCTTTTAGAGATCTTGATCATGGCTCGGAGAGGTATCACCACCGTCCAAGAGGCCACACAGAAGTGAAGGGCCATATTCCTAAAGTGTCTGTTAGAGATCTTGATGAAGACTTGGAGAGGTATCATTTAGAGGCTATGCAGATAAAAAAGAAACTGGAAAGTGAAATCATGATTGATAGCTAG 816 0.4743 MAAGIDMSLDDIIKRSTSSAAVRRRPYIPGPERRFAVRNPARPMAYYIPQDFEMKQGRQVWQGSMAPEMVLDDSASAETGTKLYISNLDYGVSSEDIKLLFSEEGELKRHCIHHDKSGRSKGTAEVVFTRHSDALAAIKRYNNMRLDGKPLKIELVGTSFVTPPVMPLYQNSLLGRPNEQGKVGGSRFYNGFARGPLPRGHREETGRIRTGSFRDLDHGSERYHHRPRGHTEVKGHIPKVSVRDLDEDLERYHLEAMQIKKKLESEIMIDS. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00215 271 Gene3D - 66 232 IPR012677 -
Seca1g00215 271 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 258 - -
Seca1g00215 271 SUPERFAMILY RNA-binding domain, RBD 74 170 IPR035979 GO:0003676
Seca1g00215 271 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 81 158 IPR000504 GO:0003723
Seca1g00215 271 Coils Coil 242 262 - -
Seca1g00215 271 MobiDBLite consensus disorder prediction 212 232 - -
Seca1g00215 271 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 152 IPR000504 GO:0003723
Seca1g00215 271 CDD RRM_THOC4 81 155 - -
Seca1g00215 271 SMART rrm1_1 82 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00215 Seca-Chr1 2501808 2503780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00215 53 156 Eukaryotic Initiation Factors Gene Family AT2G23350 32.692 1.83e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00215 K12881 - gmx:100785926 293.123