Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00207 ATGAACGAGTTTGGCGAAGGATGTAGCAAGATGAATGGGGAGGAGCCAATGATGGAGGCATTGAATGATTTGAGGTTGGAATCAGAAGAGGTGCGTAGTGGTGAAGACACGGAAGGTGATTTGGTTGTGAACGATGAAGAAGAAGCAGAGGATGAGGGGGGAGGTTTTCGGTATAGGTGTGTTGAGGATAACGGCGGAAACAATGATGGTGAACGTATAGAAATTAATAATGTCGGGGATATAGTGAAGTTGGATTTAAAGAATTTAAGCCCGCATGAGGTTGGTTTATATTATGATTTTCAGAGTTTGGAATTGGCTGCCGAGTTTTATAAAAGTTACGCAAGGAAGAACGGCTTTGCTGGTCGTGAGGGTAAGAAAAGGCACAATAAAGATGGAGTTGTGATACAACAAGCGTTTGTTTGCAACAGGGAAGGATTCAGAAGAGAGAGAGATGGTGGCACCCCGTCACAACGAAAACGACGTGCTAATACGAGGTGTGGCTGTAAGGCAGAATTCCGTGTGCATGTTAATGTGTTGTCTGGTAGGTGGTATGTGACATGGTTTGACGATGATCATAACCATGATCTGATGTCGGATGCTCATTGCGGGATGTTACCCGCTCATCAAAAGATGAGTAAAGGTCATGTTATGCAAATGAACAATTTCTTGAAGGCAGGTATACGTCCACCACACATATTGGCTGCATTCGCTCGTCAGGCAGGGGGGTATGAGAAAGTAGGGTTTCGTAAAAAGCACATGTACAACCAGATTGGTCAGCAAAGGCGTAACCAAGGCGATGATGGGAAAAGTGCTATATGCTATCTACAATGGTTGGGCTTAAAGGATTCCCTAATGTGTTGTAAACACGTAGAAGATGCAAATGGGAGCGTCAGACACATGTTTTGGTCTGATGGTCTAAGCCAGATTAGCTACCAAGCATTCGGTGATGTTTTAGCATTTGATGCTACTTACCGTAAGAACAAGTATCGATATCCCGTGGTTATATTTTCAGGTGTCAATCACCATAACCACACAACTATTTTTGCATGTGGGATAGTTTCAAATGAGACAGAAGAGACTTATGTTTGGTTATTGGAACAGTTCAATGCAGTAATGAAAGGCAAGTCCCCGGTTTCTGTAATCACTGATGGGGATTTGGCGATGAGGAATGCTATCAAAAGGGTTTATCCAAACGCCCACCATCGGTTGTGTGCATGGCACCTTATTCGCAATGCAACAAGTAATGTGTCTAATCCGGGCTTCACTGCTGCATTTACAAGGTGTATGTTGGGTGACTATGACATTGGACAATTTAAGAGAAAGTGGACAACAATGGTGAATCAGTTTGGGTTACAAGAAAATAGGTGGGTGAGGGAAATGTATGATAAAAGAAAGATGTGGGCAACTGCTTATATCTGTGGGAATTTTTTTGCAGGCTTCAGAACAACTTCCCGTTGTGAAGGATTGCATTCTCAAATACGTAAGTACGTTCACTCACAAAGCAGCCTGACAGAATTTGTTCAGCAGTTCCAACGCTGCTTGTATGAAATGCGGTTCAGGGAAGCAGAAGCTGATTTTGCCTCGGTACATGGGGAGCCTGAATATCATGGTCAATTACGAAGCCTGCAAATATCTGCTGCCAAGCTGTTTACTAGGGAGATGTTTGATATTTTCCTTCCTGTGCTTGACAGAGCTGCTATATTGAAAATGACTGGGCAGAGGGAGAATTACCCAAGTGTGATATATGTGGTGCAAAAATACCAAGTTGATGAGAAGGAGTGGTATGTGACTTGTAACCTATTGAGCAATGAATATAGGTGTTCATGTCTAAGAATGGAGTCTTATGGCATGCCATGTGACCATATGATTGTTGTGTTAGTGTACCTAAATATAAGTGAGGTTCCGAAATGTATGGTTATGCAAAGATGGTGCAAGGGAGCTAAGTCTTTACTATGTGGTGAGCTTGGTCAAGGATCAAATTTCTGGGACACAGAATCTGTTGGCAGATTTGCTTTCGTGTTGGATGTATATTATAATGTGTGTAGACTGGCTAGTAAGAGTGTTGATGACTACAATGAGCAGTATAAGAAGGGCATGAATGATTATAACCATTTGAAGGAGAAGAATGGGCATGTAAGTGATGATGAAGAAAGTCGAAGGCAGGGTGGGAATGGTGGTGTTAGAGGTGGAAGGATTCAGAGAGGTAGGGGACGTATAGGGAGTACCTCATCAACTCCACGGTTGTGGTCAAAGCGAACCACCCATTGCAGTTTGTGTCATGTGGCTGGTCACAATAGGTTAACTTGTCCCCTTCGGGAACAACTTAGTGAGATGATTCAGCAAATGTATGGGACTTCTATACCCCATGGAGATGTAGATCTTTCTTTTAGCAATGAGGACTCCAATATGTCTTGGGAGTGGATTGGGTTTGCAGCATGGACATCGTGTGATAGTAGTGGAGTGTGA 2466 0.4303 MNEFGEGCSKMNGEEPMMEALNDLRLESEEVRSGEDTEGDLVVNDEEEAEDEGGGFRYRCVEDNGGNNDGERIEINNVGDIVKLDLKNLSPHEVGLYYDFQSLELAAEFYKSYARKNGFAGREGKKRHNKDGVVIQQAFVCNREGFRRERDGGTPSQRKRRANTRCGCKAEFRVHVNVLSGRWYVTWFDDDHNHDLMSDAHCGMLPAHQKMSKGHVMQMNNFLKAGIRPPHILAAFARQAGGYEKVGFRKKHMYNQIGQQRRNQGDDGKSAICYLQWLGLKDSLMCCKHVEDANGSVRHMFWSDGLSQISYQAFGDVLAFDATYRKNKYRYPVVIFSGVNHHNHTTIFACGIVSNETEETYVWLLEQFNAVMKGKSPVSVITDGDLAMRNAIKRVYPNAHHRLCAWHLIRNATSNVSNPGFTAAFTRCMLGDYDIGQFKRKWTTMVNQFGLQENRWVREMYDKRKMWATAYICGNFFAGFRTTSRCEGLHSQIRKYVHSQSSLTEFVQQFQRCLYEMRFREAEADFASVHGEPEYHGQLRSLQISAAKLFTREMFDIFLPVLDRAAILKMTGQRENYPSVIYVVQKYQVDEKEWYVTCNLLSNEYRCSCLRMESYGMPCDHMIVVLVYLNISEVPKCMVMQRWCKGAKSLLCGELGQGSNFWDTESVGRFAFVLDVYYNVCRLASKSVDDYNEQYKKGMNDYNHLKEKNGHVSDDEESRRQGGNGGVRGGRIQRGRGRIGSTSSTPRLWSKRTTHCSLCHVAGHNRLTCPLREQLSEMIQQMYGTSIPHGDVDLSFSNEDSNMSWEWIGFAAWTSCDSSGV. 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00207 821 MobiDBLite consensus disorder prediction 704 747 - -
Seca1g00207 821 Coils Coil 688 708 - -
Seca1g00207 821 MobiDBLite consensus disorder prediction 704 722 - -
Seca1g00207 821 ProSiteProfiles Zinc finger SWIM-type profile. 596 630 IPR007527 GO:0008270
Seca1g00207 821 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 99 703 IPR031052 GO:0006355
Seca1g00207 821 Pfam FAR1 DNA-binding domain 108 197 IPR004330 -
Seca1g00207 821 SMART 26again6 605 632 IPR006564 GO:0008270
Seca1g00207 821 MobiDBLite consensus disorder prediction 28 58 - -
Seca1g00207 821 Pfam MULE transposase domain 317 411 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00207 Seca-Chr1 2434277 2437517 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g00207 MULE 1.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00207 - - tpra:123913749 716.457