Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00205 ATGGCCGGAAAAGGAGATGGTCCTGCAATCGGAATCGATCTTGGCACCACCTACTCCTGCGTCGGAGTGTGGCAGCATGACCGTGTCGAAATCATCGCCAACGATCAAGGAAACCGAACTACACCTTCTTACGTTGCTTTCACCGATTCTGAGCGTTTGATCGGCGATGCTGCCAAGAACCAGGTCGCAATGAACCCTATTAACACCGTCTTTGGTAAGATTTTCATTCTATATCTTAAGTTTATCACGATCTGTTTTTGTTTTTACTTTTATCTATATCTTGGATCGTAG 291 0.4502 MAGKGDGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKNQVAMNPINTVFGKIFILYLKFITICFCFYFYLYLGS. 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00205 96 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Seca1g00205 96 Pfam Hsp70 protein 9 72 IPR013126 GO:0005524|GO:0140662
Seca1g00205 96 SUPERFAMILY Actin-like ATPase domain 8 85 IPR043129 -
Seca1g00205 96 PANTHER HEAT SHOCK PROTEIN 70KDA 9 72 IPR013126 GO:0005524|GO:0140662
Seca1g00205 96 PRINTS 70kDa heat shock protein signature 36 48 - -
Seca1g00205 96 PRINTS 70kDa heat shock protein signature 58 66 - -
Seca1g00205 96 PRINTS 70kDa heat shock protein signature 8 21 - -
Seca1g00205 96 Gene3D - 2 82 - -
Seca1g00205 96 FunFam Heat shock cognate 71 kDa protein 4 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00205 Seca-Chr1 2419364 2419654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00205 1 71 Calmodulin-binding Proteins AT3G09440 98.592 1.31e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00205 K03283 - osa:4332413 149.058