Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00197 ATGGCCGGAAAAGGTGAGGGACCGGCGATCGGAATCGATCTTGGAACCACCTACTCCTGCGTTGGAGTGTGGCAGCACGATCGCGTCGAGATCATCGCCAATGATCAGGGGAACCGTACGACGCCGTCTTATGTTGCCTTCACCGACACCGAAAGATTGATAGGCGATGCAGCAAAGAACCAGGTCGCCATGAACCCAATCAACACCGTCTTTGGTAATTCCTCGCTCTCTATTTGA 237 0.5359 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPINTVFGNSSLSI. 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00197 78 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Seca1g00197 78 Gene3D - 2 76 - -
Seca1g00197 78 Pfam Hsp70 protein 9 72 IPR013126 GO:0005524|GO:0140662
Seca1g00197 78 FunFam Heat shock 70 kDa protein 1A 2 77 - -
Seca1g00197 78 PANTHER HEAT SHOCK PROTEIN 70KDA 9 73 IPR013126 GO:0005524|GO:0140662
Seca1g00197 78 PRINTS 70kDa heat shock protein signature 58 66 - -
Seca1g00197 78 PRINTS 70kDa heat shock protein signature 8 21 - -
Seca1g00197 78 PRINTS 70kDa heat shock protein signature 36 48 - -
Seca1g00197 78 SUPERFAMILY Actin-like ATPase domain 8 73 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00197 Seca-Chr1 2381096 2381332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00197 1 76 Calmodulin-binding Proteins AT5G02500 90.789 3.84e-46 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00197 K03283 - csin:114269599 149.058