Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00192 ATGTGTGCTGTTGCGACGCCGTGTGATCCTTTTGCAATGCAAGTTCTTCTGGTAGATGAAGAGGGTGGGCGAATTGAAGGAACTATTAAGAAGCAAGATATGAGGAAGTTTGTGAACCTTCTGGTGGAGGGTCAGGTTTACAAGATATCTCACTTTTCCATAACATCCAACTTTGGAAACTTTAGAGCCGCGGTCCACGACTATAAGATTTCTTTTAATGGGAGCACCAAAGTTATTCCCTTTCCTAATGTTGCGATTCCTTTTCATGGACTTTGTCTGTCAAAAAGTTCTGATATCATTAAAACAAAGGGACATTCTAATTACCTAATTGATTTCATGGGTGTTCTAACCGCGACCTCAGATGAGATGAAGTTGGTCTCCAGAGATGAGAGACAAACTTGGCTACTGTTGCTAGATTTGGTGGATGAAATGGGGAAGATAAGGTGTGCTATCTTTGGAGATTTCATCGATACTGTTGTGGAATTCCTTGCGTTGCCTCGGTGTGGCTTGCCCGTGGTCATAGTCCAGCTGGCCAAGGTGAATATATACAAGGGTGAGGTGTGGATTCAAAATGTCATGAATGCATCAAAGATCTTGTGGGATCCAGATCTTCCAGAAGCCATAAAATTTAAGAATGGGTATAAGTTGAAAATTGAGGTGTCTGATGGAGAACAAGAAGCTAGGCTGGTTATATTTGATGCTGAGTGTTACACATTATTCAATCGTGCTTGCAAAGATATGTTGCTAGACTCAAAGTGGTTGATTGTCTTTGCTTTATTAACATGTGGAACTAAAGTTTTCATTAGCTTGATTGGCAAAGAATTCCTATTCAAAGTTGATACCAAAGTGGATGAGTCCAATGCCATCGATGATTGCTATCCAGTGAAGAGGATATGCTTTGACCCAACAATTATTGGTGAATTCAAGGCTGAATTACTTCATGAAACACCCCTGAAGAATAAATTTGCACCATTGTTCCCTTCTACTGATGTCATTGAAGGGAGTAGTTGTTTACCAGATGCAAAGTCTGAACCAAACTCGGTTATTACTGTTGCTGATGACATCCCCCACTCTGCTGGGGAACCTGCTGCAACCCCTAATGAAGATCCAAGTTCCTCCAAACTTGATGGTGATGAGTCAGTGGATGCTCCACTTGAGAGAAGGAAAAGGGGGAAGTTGCTGCCAATCAAGATGGAGAAGATGGAGTAG 1209 0.4169 MCAVATPCDPFAMQVLLVDEEGGRIEGTIKKQDMRKFVNLLVEGQVYKISHFSITSNFGNFRAAVHDYKISFNGSTKVIPFPNVAIPFHGLCLSKSSDIIKTKGHSNYLIDFMGVLTATSDEMKLVSRDERQTWLLLLDLVDEMGKIRCAIFGDFIDTVVEFLALPRCGLPVVIVQLAKVNIYKGEVWIQNVMNASKILWDPDLPEAIKFKNGYKLKIEVSDGEQEARLVIFDAECYTLFNRACKDMLLDSKWLIVFALLTCGTKVFISLIGKEFLFKVDTKVDESNAIDDCYPVKRICFDPTIIGEFKAELLHETPLKNKFAPLFPSTDVIEGSSCLPDAKSEPNSVITVADDIPHSAGEPAATPNEDPSSSKLDGDESVDAPLERRKRGKLLPIKMEKME. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00192 402 Gene3D - 10 83 IPR012340 -
Seca1g00192 402 SUPERFAMILY Nucleic acid-binding proteins 14 84 IPR012340 -
Seca1g00192 402 MobiDBLite consensus disorder prediction 353 402 - -
Seca1g00192 402 SUPERFAMILY Nucleic acid-binding proteins 98 217 IPR012340 -
Seca1g00192 402 MobiDBLite consensus disorder prediction 372 402 - -
Seca1g00192 402 Pfam Domain of unknown function DUF223 15 81 IPR003871 -
Seca1g00192 402 Gene3D - 85 222 IPR012340 -
Seca1g00192 402 CDD RPA1_DBD_A_like 9 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00192 Seca-Chr1 2303639 2308933 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00192 17 212 Core DNA Replication Machinery Family AT4G19130 27.861 7.57e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00192 - - lja:Lj6g3v0884310.1 186.808