Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00185 ATGCTGCTAAGAATCAGGCAGCCACCAACCCAACCAACACTGTCTTTGGTCATTGCTGGTGTTAATGACAAACCCATGATCGTTGTTAAGTACAAGGGTCAAGAGAAACTCCTTTCAGCTGAGGAAATTTCATCAATGGTCCTTGAAAAGATGAAGGAGACTGCAGAGGCATATTTGGAGTCACCTCGCCAAGCTACCAAAGATGCTGGTACCATTGCTGGTCTCAATATTATGCGGATAATCAATGAGCCTACTGCTGCAGCTCTTGCTTATGGCCTTGACAAGAGAACTAAATGTGTTGGAGAGCGAAATATTTTCATCTCTGATCTTGGTGGTGGTACTTTTGATGTGTCTCTCCTCACCATTAAGGGTGATGTCTTTGAAGTCAAGGCCACTGCTGGAGACACCCACCTTGGAGGAGAGGACTTTGATAACAGACTGGTGAACTACTTCGTACAAGAGTTCAAAAGGAAGAACAAAATGGACATTAGTGGGAACCCAAGAGCGCTGAGGAGGTTGAGAACTGCATGTGAGAGGGCAAAAAGGACACTATCTTTTGCTGTTGATACCACCATTGAGGTAGATGAGATGAATCATTCACACTCATTAGAGTTTAAGCCTTCTGGAGCACCATACAGGTGCAGTGGATGTAAAGAATTAGGATTTGGATCAAGTTACCGCTGTGAATTCAACAATTGCAGTTACATTCTCCATCAAGAGTGTGGTAATGTTGTTTCCCCTGCCTCTCATTCATTTTTCAAAGGAAGTTACTTCGAGTTCCATGAGAGAGCACCTGGAACTAGATATTGTGATGCATGTGGAAAGGATGTGTTGGGGTTTGTCTATCATTGCTCCCACACAGGATTTGATTTACATCCATGTTGTTTAAACCTGAAAGATAGTGTCTCTGATGAAGGTGGAAATGTGACACTGAAATTGAGTCAGAAGGTTCCCTCAAAGTGCCTAAAATGTAACCATAGGAGTGTTGTGAATAAAGTGAAAGGGTGGTCTTATGTATGTTCTGATAATAGTTCTTGTTATCATGTGTCATGTGTTAAGGAATTGATTCTTGAGAATTGGAATAGGGGATATTTTTCTCAAGGAATTACCAATAATTCATCAATTAATTATAATAGGGTGGTGGTGAGTGATGGAGATCAGTCTCAATCTCATCAAATTGTACTGCCAAGCATGGAATTGGGAAGGTCAAGGACTATGAGGAACTTCACCAAGATGGCGGTGTTGGTATTCAAGTTAATATTTTCAGCTATTTTTGGGAATCCTATATCTGCTATTGCTGCTCTCTTGGAAGCTCTGGTTTCAGATTAA 1329 0.4138 MLLRIRQPPTQPTLSLVIAGVNDKPMIVVKYKGQEKLLSAEEISSMVLEKMKETAEAYLESPRQATKDAGTIAGLNIMRIINEPTAAALAYGLDKRTKCVGERNIFISDLGGGTFDVSLLTIKGDVFEVKATAGDTHLGGEDFDNRLVNYFVQEFKRKNKMDISGNPRALRRLRTACERAKRTLSFAVDTTIEVDEMNHSHSLEFKPSGAPYRCSGCKELGFGSSYRCEFNNCSYILHQECGNVVSPASHSFFKGSYFEFHERAPGTRYCDACGKDVLGFVYHCSHTGFDLHPCCLNLKDSVSDEGGNVTLKLSQKVPSKCLKCNHRSVVNKVKGWSYVCSDNSSCYHVSCVKELILENWNRGYFSQGITNNSSINYNRVVVSDGDQSQSHQIVLPSMELGRSRTMRNFTKMAVLVFKLIFSAIFGNPISAIAALLEALVSD. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00185 442 Gene3D - 96 138 - -
Seca1g00185 442 SUPERFAMILY Actin-like ATPase domain 17 95 IPR043129 -
Seca1g00185 442 Gene3D Actin; Chain A, domain 4 139 204 - -
Seca1g00185 442 Gene3D - 17 46 - -
Seca1g00185 442 PANTHER HEAT SHOCK PROTEIN 70KDA 16 198 IPR013126 GO:0005524|GO:0140662
Seca1g00185 442 Pfam Hsp70 protein 17 195 IPR013126 GO:0005524|GO:0140662
Seca1g00185 442 Gene3D - 47 95 - -
Seca1g00185 442 FunFam heat shock 70 kDa protein-like 18 103 - -
Seca1g00185 442 Pfam C1 domain 199 241 IPR004146 -
Seca1g00185 442 SUPERFAMILY Cysteine-rich domain 232 300 IPR046349 -
Seca1g00185 442 FunFam heat shock 70 kDa protein 14 139 208 - -
Seca1g00185 442 SUPERFAMILY Actin-like ATPase domain 102 197 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00185 Seca-Chr1 2254472 2260553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00185 17 197 Calmodulin-binding Proteins AT5G02500 70.051 9.25e-89 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00185 K03283 - gmx:100816065 330.102