Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00179 ATGGCGAGAAGATATGAAGGATGTGCAGTAGGAATAGACCTTGGCACGACTTACTCGTGCGTTGCAGTGTGGCGAGAGCAACAAAGTAGGGTGGAGATTATCGAAAACGATCAAGGGAAGAGAACCACACCTTCTTGTGTTGCTTTCACTGACAATGAAAGATTGATTGGTAATGCTGCTATGAATCAGGCTGCCCTCAACCCTGAGAACACCATCTTTGGTAACAAACTTTCTACTCTATACTCTATTTATTAG 255 0.4353 MARRYEGCAVGIDLGTTYSCVAVWREQQSRVEIIENDQGKRTTPSCVAFTDNERLIGNAAMNQAALNPENTIFGNKLSTLYSIY. 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00179 84 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Seca1g00179 84 Pfam Hsp70 protein 9 76 IPR013126 GO:0005524|GO:0140662
Seca1g00179 84 SUPERFAMILY Actin-like ATPase domain 8 77 IPR043129 -
Seca1g00179 84 Gene3D - 2 84 - -
Seca1g00179 84 PRINTS 70kDa heat shock protein signature 8 21 - -
Seca1g00179 84 PRINTS 70kDa heat shock protein signature 38 50 - -
Seca1g00179 84 PRINTS 70kDa heat shock protein signature 60 68 - -
Seca1g00179 84 PANTHER HEAT SHOCK PROTEIN 70KDA 9 76 IPR013126 GO:0005524|GO:0140662
Seca1g00179 84 FunFam heat shock 70 kDa protein-like 3 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00179 Seca-Chr1 2186936 2187190 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00179 1 76 Calmodulin-binding Proteins AT5G02490 71.053 8.46e-31 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00179 K03283 - gmx:102667572 128.642