Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00178 ATGGCAAGACAAAATGATGGATGTGCGGTAGGAATAGACCTTGGCACGACCTACTCATGTGTTGCAGTATGGCAAGAGCAACACTGTCGAGTGGAGATCATCCACAATGACCAAGGCAACAGAACCACACCTTCATGTGTTGCTTTCACTGACAACCAAAGATTGATTGGTGATGCTGCTAAGAATCAGGCTGCCACCAACCCTGAAAACACTGTCTTTATGCTAAGAGGTTAA 234 0.4573 MARQNDGCAVGIDLGTTYSCVAVWQEQHCRVEIIHNDQGNRTTPSCVAFTDNQRLIGDAAKNQAATNPENTVFMLRG. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00178 77 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Seca1g00178 77 Gene3D - 1 76 - -
Seca1g00178 77 Pfam Hsp70 protein 9 74 IPR013126 GO:0005524|GO:0140662
Seca1g00178 77 PRINTS 70kDa heat shock protein signature 38 50 - -
Seca1g00178 77 PRINTS 70kDa heat shock protein signature 60 68 - -
Seca1g00178 77 PRINTS 70kDa heat shock protein signature 8 21 - -
Seca1g00178 77 SUPERFAMILY Actin-like ATPase domain 9 73 IPR043129 -
Seca1g00178 77 PANTHER HEAT SHOCK PROTEIN 70KDA 9 73 IPR013126 GO:0005524|GO:0140662
Seca1g00178 77 FunFam heat shock 70 kDa protein-like 3 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00178 Seca-Chr1 2172072 2172578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00178 1 73 Calmodulin-binding Proteins AT1G56410 76.712 3.47e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00178 K03283 - gmx:102667572 143.28