Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00169 ATGAAAGAAAAGTTGGCTTTCGTTTCCATTGACTATGAGCAAGAGCTAGTGAGATCCAAGAGAAACAATTCTTCTGTGAAGAAGAGCTATGAGTTGCCTGATGGGGAAGTAATCACTATTGGTGATGAGCGATTCAGATGTGCAGAGGCTTTGTTCCAACCATCCTTGATAGGAATGGAAAATGCAGTGGGGATTCATGAGGCAACATACAACTCCATAATGAAATGTGAAATTGATCTCAGGAGAGACCTTTATGCTAGTATTGTACTTTCGGGAGGAACAACCATGTTCCCAGGCATCGCTGATAGAATGAGTAAGGAAATTTCTGCATTAGCCCCAAGTAGCATAAATGTCAAGGTTGCGGCGCCACCTGAGAGAGAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCATCCCTCTCCACCTTCCAGGGGCAGTGGATTTCAAAGGATGAATATGATGAATCCGGTCCAACAATTATACATCAAAAGTGCTTTTGA 501 0.4311 MKEKLAFVSIDYEQELVRSKRNNSSVKKSYELPDGEVITIGDERFRCAEALFQPSLIGMENAVGIHEATYNSIMKCEIDLRRDLYASIVLSGGTTMFPGIADRMSKEISALAPSSINVKVAAPPEREYSVWIGGSILASLSTFQGQWISKDEYDESGPTIIHQKCF. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00169 166 SMART actin_3 1 166 IPR004000 -
Seca1g00169 166 Gene3D - 128 164 - -
Seca1g00169 166 FunFam Major actin 48 129 - -
Seca1g00169 166 Gene3D - 28 127 - -
Seca1g00169 166 Pfam Actin 1 166 IPR004000 -
Seca1g00169 166 FunFam Putative actin-related protein 5 130 158 - -
Seca1g00169 166 ProSitePatterns Actins signature 2. 147 155 IPR004001 -
Seca1g00169 166 SUPERFAMILY Actin-like ATPase domain 1 166 IPR043129 -
Seca1g00169 166 PANTHER ACTIN 1 159 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00169 Seca-Chr1 2073940 2074927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00169 1 166 Cytoskeleton Gene Families AT5G09810 76.506 2.63e-92 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00169 K10355 - osa:9269066 270.396