Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00168 ATGGAGGATACCCACATATGCATTGGAGACTTTGCAAAGAAAATTGGTTATAATGTACTCTACGAGGAATCTATTTCCTTTTATGGTGGTCTAGATGGGAGGAGGATTGAGTCCATGGGTGGATTCATTGATGATGGTTACCTGAATGGACAGTTAGGTGTCACTCGTACTCTAGAAGATTGTCAACTAGAAGGAATGAAGGAAATGAGTGGGAGAGGTGGACGATTGAGTGTTGAACCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTATTAATAAGTGGCAGTGATGGAATTTGCGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTCGAAGGAGGCTTCAAGAGCACAATGATGTGAAACAGTGTTCAAAGGAAATAATAGGGGAAGTAATAAAGAAAGGAGCAACAGACAATTTGATATTTTTGATGGTTTGTTTTCACTCAGATCCACCACCACCTATGGTTGTAGAAAGGCTTAGAGTCAGGAGAAGCACATCTGCTGAGGGACTTCAGAATCTTAAATACCTACAACAAGGATAG 555 0.3946 MEDTHICIGDFAKKIGYNVLYEESISFYGGLDGRRIESMGGFIDDGYLNGQLGVTRTLEDCQLEGMKEMSGRGGRLSVEPELKLMTLTKEDELLISGSDGICDVFSSQNAVDFARRRLQEHNDVKQCSKEIIGEVIKKGATDNLIFLMVCFHSDPPPPMVVERLRVRRSTSAEGLQNLKYLQQG. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00168 184 ProSiteProfiles PPM-type phosphatase domain profile. 1 151 IPR001932 -
Seca1g00168 184 PANTHER PROTEIN PHOSPHATASE 2C 34 133 IPR015655 GO:0004722|GO:0006470
Seca1g00168 184 Pfam Protein phosphatase 2C 34 143 IPR001932 -
Seca1g00168 184 Gene3D - 31 154 IPR036457 -
Seca1g00168 184 CDD PP2Cc 34 151 IPR001932 -
Seca1g00168 184 SUPERFAMILY PP2C-like 34 152 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00168 Seca-Chr1 2069407 2070075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00168 34 184 PP2C-type Phosphatase Gene Family AT2G25620 55.556 6.17e-51 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00168 K14803 - gmx:100782648 248.054