Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00165 ATGACAGACGCCGAGGATATGCCACCTCTTATTTTTGACATTGGAACGACCATGTTTAAGGATGCATATGTTGGTGATGAAGCGTTGTTTAATTATGATAGTGTGACTCTCAATCACCCAATAGAACATGGAATTGTGAGGTATTGGGATGATATGGAAAAGATTTTCCATCATACCTTCTATAATGAGCTTCGTGTTACCCCAGAAAAGCATCCAGTTATGCTAACTGAGGTTCCTCTTAATCCCAAGGCTAACCGTGAGAAGATGACCCAAATCATGTTTGAGACTTTTACAACCCCTGCTATATATATAAGCTTTAGTGCTCTCCATATACTATATGCGTCTGGTCGTACTACTGGTATTGTTATGGATTCTGGTGGTGGAATGAGTTGCGTTGTCCCTATGTACAATGGTCAACCTATCCCATATGCCACCCATCGTCTTGATCTGGCTGGTGGTGACATAACTGATTTCTTGATGAAAATTTTGAATAAACGTGGTTATTCTTTCAACACCTCGGCAGAACGTGAAATTATAAGAGATATGAAAGAAAAGTTGGCTTACATTGCCCTTGACTATGAGCAAGAGTTGGTGACAGGCAAGACAAACAGTAGTTTGAAGAGATATGAGTTGCCTGACGGGAGGGTAATCAGTATTGGTGATGAGTGTTTCAAATGTGCAGAGGTGTTGTTCCAACCATCCTTGATACAAAGTAAAGAACCTGGCATTCATGAAGCAATGTACAACTCCATAATGAAATGTGATGATGATATCAGGAAAGAGTTGTATGATAACATTATCCTTTCTGGGGGAACAACCTTGTTACCAAATATTGTTGATAGAATGAGGAAGGAAATCAGTGCATTAGCCCCAAGAAGCATGAAGATCAGGGTTGTGGCGCAACCTGAGAGAAAGTATGTTGCTTGGATTGCTTGTTCTATCTTGGCATCCCTTAACACCTTCCGGCCGATGTGGATTACAAAAGCAAAATATGATGAGTTTGGGCCATCAATTGTGCATAGAAAGCGCTTTTAA 1035 0.4048 MTDAEDMPPLIFDIGTTMFKDAYVGDEALFNYDSVTLNHPIEHGIVRYWDDMEKIFHHTFYNELRVTPEKHPVMLTEVPLNPKANREKMTQIMFETFTTPAIYISFSALHILYASGRTTGIVMDSGGGMSCVVPMYNGQPIPYATHRLDLAGGDITDFLMKILNKRGYSFNTSAEREIIRDMKEKLAYIALDYEQELVTGKTNSSLKRYELPDGRVISIGDECFKCAEVLFQPSLIQSKEPGIHEAMYNSIMKCDDDIRKELYDNIILSGGTTLLPNIVDRMRKEISALAPRSMKIRVVAQPERKYVAWIACSILASLNTFRPMWITKAKYDEFGPSIVHRKRF. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00165 344 SMART actin_3 7 344 IPR004000 -
Seca1g00165 344 FunFam Actin, alpha skeletal muscle 150 240 - -
Seca1g00165 344 Pfam Actin 21 343 IPR004000 -
Seca1g00165 344 Gene3D - 108 307 - -
Seca1g00165 344 SUPERFAMILY Actin-like ATPase domain 6 122 IPR043129 -
Seca1g00165 344 FunFam Major actin 214 307 - -
Seca1g00165 344 SUPERFAMILY Actin-like ATPase domain 116 344 IPR043129 -
Seca1g00165 344 Gene3D Actin; Chain A, domain 4 150 240 - -
Seca1g00165 344 PRINTS Actin signature 205 221 IPR004000 -
Seca1g00165 344 PRINTS Actin signature 54 72 IPR004000 -
Seca1g00165 344 PRINTS Actin signature 19 30 IPR004000 -
Seca1g00165 344 PRINTS Actin signature 110 129 IPR004000 -
Seca1g00165 344 PRINTS Actin signature 85 98 IPR004000 -
Seca1g00165 344 PANTHER ACTIN 9 337 IPR004000 -
Seca1g00165 344 FunFam Actin, alpha skeletal muscle 12 116 - -
Seca1g00165 344 CDD NBD_sugar-kinase_HSP70_actin 10 151 - -
Seca1g00165 344 Gene3D - 6 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00165 Seca-Chr1 2051383 2056357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00165 1 344 Cytoskeleton Gene Families AT3G12110 64.721 4.69e-175 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00165 K10355 - gmx:100792119 481.1