Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00164 ATGTCTTCTCAAGGAGATGATCATCACAGGAATGGCGTCCACTTTTTCAAGGTTATTCTTGAAAGAACCCTTCAAACTGGAGAGTTGAAAGTGCCAGGAAGTTTTGTGAAAAAACATTGGGAAGGAATAGAAAATCCTGTTTCTGTAAGGCTTCCAAACAAGATTGAATGGAAAGTTTATTGGGCAAAGCATGATGGTGATGTTTTGTTTTGCAATGGTTGGAAGGAATTTGCAGAATACTTGTCTTTGAAAGTGTCATGTGATGATGCTGATGAAGAGGGAGATGAAGAGGTTGATCAGAGTGATTATTCTTTGAAAATTCTTGATGATGGTTCACCACTGGAGGTTGTTTACAATTTACCTCCCGGGTTGTGCATGAAGCGCAAATATATGATGTTGTCTATGATGATCTCTGGTCCACGTCAGCCTGGAAATGACATTGATGTTTATCTCAGTCCATTGATAGAAGATCTGAGATTGCTATGGGATGAGGGGGTAGAAGTCTATGATGGGTTTGCCAAAGAATCTTTCAAGATGCATGCAATGCTCTTTTGTACCATCAATGACTTTCCTGCATATGGGAACTTGTCGGGTTATAGTGTTAAGGGTCATAAAGCTTGTCCTGTGTGTGAAGAGGGCACATTCCATCAGCAATTGAAATATGGAAGGAAGACAATATATGTTGGTCATCGGAGATTCTTGAAAAGGCATCACCCATATAGAAGATTGAGGAAGGCTTTAATGGATATCCGGAGGATGGGATAG 765 0.4026 MSSQGDDHHRNGVHFFKVILERTLQTGELKVPGSFVKKHWEGIENPVSVRLPNKIEWKVYWAKHDGDVLFCNGWKEFAEYLSLKVSCDDADEEGDEEVDQSDYSLKILDDGSPLEVVYNLPPGLCMKRKYMMLSMMISGPRQPGNDIDVYLSPLIEDLRLLWDEGVEVYDGFAKESFKMHAMLFCTINDFPAYGNLSGYSVKGHKACPVCEEGTFHQQLKYGRKTIYVGHRRFLKRHHPYRRLRKALMDIRRMG. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00164 254 CDD B3_DNA 14 85 IPR003340 GO:0003677
Seca1g00164 254 Gene3D - 7 87 IPR015300 -
Seca1g00164 254 Pfam Transposase family tnp2 116 246 IPR004242 -
Seca1g00164 254 SUPERFAMILY DNA-binding pseudobarrel domain 12 85 IPR015300 -
Seca1g00164 254 PANTHER B3 DOMAIN-CONTAINING 10 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00164 Seca-Chr1 2033297 2036168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00164 15 85 B3 DNA Binding Superfamily AT3G18990 32.394 1.71e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00164 - - vra:106754688 232.646