Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00151 ATGGATGAGTCATCTCCTAATACATTGGTACAGTGTCGAATATGCCATGATGAGGATCAAGACTCTAACATGGAGACACCCTGTTCTTGTAATGGCACCTTGAAGTATGCACATAGAAAATGTGTTCAAAGATGGTGCAATGAGAAAGGAGATGCTACCTGTGAAATTTGCCAACAGCAATTAAGGGGCTATACTGCACTTCCACCAGCTCCCTTATTCCCTTATGGTGGTTCTCCAATAAATTTTGGGTATCTGTTAATCAATCAGTGA 270 0.4111 MDESSPNTLVQCRICHDEDQDSNMETPCSCNGTLKYAHRKCVQRWCNEKGDATCEICQQQLRGYTALPPAPLFPYGGSPINFGYLLINQ. 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00151 89 CDD RING_CH-C4HC3_MARCH 12 58 - -
Seca1g00151 89 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 67 IPR013083 -
Seca1g00151 89 FunFam Zinc finger family protein 1 66 - -
Seca1g00151 89 SMART ringv_2 11 58 IPR011016 GO:0008270
Seca1g00151 89 Pfam RING-variant domain 12 57 IPR011016 GO:0008270
Seca1g00151 89 ProSiteProfiles Zinc finger RING-CH-type profile. 4 64 IPR011016 GO:0008270
Seca1g00151 89 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 3 69 IPR033275 -
Seca1g00151 89 SUPERFAMILY RING/U-box 9 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00151 Seca-Chr1 1836602 1837667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00151 12 62 C3H Transcription Factor Family AT2G37950 46.296 4.40e-10 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00151 - - lja:Lj1g3v3244520.2 166.007