Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00149 ATGTTTGAACAGGCTATTATCCATTTGGGAGCAATTGAGTTGCTTGGAGAGTGTTTTTCATCATCTAGGAAAAAGAACCGGCCTTTGCCACAAAGACTAAGCTGTATGCATCGTGCGCCATACCAGGAGCATACTGAGAACATTGGTGCCAGCAATAGCGATGATGCCTTCTATAGGTATAAGATGCCTAAAATGATTACAAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAATATTGTCAACATGGTTGATATTGCAAAAGCGTTGGCAAGGCCAGCCTCTTACACAACAAAGTATTTTGGTTGTGAACTTGGGGCCCAATCAAAATTTGATGAGAAAACTGGGACTTCTCATGTTAATGGGGCACATGATACTGCAAAACTTGCTGGTCTTCTAGAGATTTTCATCAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCTTAATTACTAAGAATCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATATGAGGGACAAGCTGACTACCTTCATCATTAAGAACCCTCCTGAAATCAAGAAAGGATCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAAATTAAGAAAGAGAGTAAGAAGAAAGGCACTACGTCTTCTAAGGATGGCGCCACAAAATCTACCTCTTCAAGGAAGAAAGCAAATGGCTCTGATGAAGACCGCACATCTCCTACTCATAGTCTAGTTGATGAGAAGGATGAGGCTCAAGATGCAGAAAATGATGATGATGACGTGCAATGGCAAACAGATACATCACTAGAGGCTGCTAGACAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACTAATGAACCAGAGAAGAAGGAGAAAGCAGCAAATATGGTAAGTAATAATTCTGAGAATGGTAACTCCATGCACTACAGGACTCTGGTTGAGGAAGTCAAAGCAAATTTGAAGAACGGTGCTAAAGCAAAAGAATTGCTGACCCATTTAGCAACACTTACTGGATCTGCTCAAGAAAAGATGAGTGCTCTTTATGAAGCCCTTTTCATGGGCATTGAGAAAGGGTTTGGAAAAGAAGCTCTCAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCTGAGGACGAGGGAATGCAGTTGTTATTGTTGCATGCAATTGAGGAATTTTCTTGCAAGTCTACTTCCAATGCATTAAAGGAGGTTGCTCTGGTCTTGAAGGCTCTCTATGATGCTGATGTGTTGGAGGAAGAGCAGATAGTGCAGTGGTATCAGAAAGGGCTGAATGGCGATAACAAGAACTCCCAGATTTGGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAATGCCGAATCAGAATCGGAGGAAGAATGA 1458 0.4211 MFEQAIIHLGAIELLGECFSSSRKKNRPLPQRLSCMHRAPYQEHTENIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETEILITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEIKKGSKDKKAMRRAEKERLKEGEAADEELKKIKKESKKKGTTSSKDGATKSTSSRKKANGSDEDRTSPTHSLVDEKDEAQDAENDDDDVQWQTDTSLEAARQRIQEQLSAVTADMVMLSTNEPEKKEKAANMVSNNSENGNSMHYRTLVEEVKANLKNGAKAKELLTHLATLTGSAQEKMSALYEALFMGIEKGFGKEALKKKSYLAAAVAEDEGMQLLLLHAIEEFSCKSTSNALKEVALVLKALYDADVLEEEQIVQWYQKGLNGDNKNSQIWKNAQPFIDWLQNAESESEEE. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00149 485 MobiDBLite consensus disorder prediction 191 267 - -
Seca1g00149 485 MobiDBLite consensus disorder prediction 191 279 - -
Seca1g00149 485 FunFam Eukaryotic translation initiation factor 5 147 187 - -
Seca1g00149 485 SMART 542_3 393 481 IPR003307 GO:0005515
Seca1g00149 485 SUPERFAMILY ARM repeat 335 479 IPR016024 -
Seca1g00149 485 Gene3D - 41 146 - -
Seca1g00149 485 ProSiteProfiles W2 domain profile. 328 485 IPR003307 GO:0005515
Seca1g00149 485 Gene3D - 147 187 - -
Seca1g00149 485 SMART eIF2Bneu4 57 171 IPR002735 GO:0003743|GO:0006413
Seca1g00149 485 Pfam eIF4-gamma/eIF5/eIF2-epsilon 407 485 IPR003307 GO:0005515
Seca1g00149 485 FunFam Eukaryotic translation initiation factor 5 43 146 - -
Seca1g00149 485 CDD W2_eIF5 338 483 - -
Seca1g00149 485 Gene3D - 325 485 - -
Seca1g00149 485 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 45 484 IPR045196 GO:0003743|GO:0006413
Seca1g00149 485 Pfam Domain found in IF2B/IF5 53 169 IPR002735 GO:0003743|GO:0006413
Seca1g00149 485 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 140 175 IPR016190 GO:0003743|GO:0006413
Seca1g00149 485 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 52 143 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00149 Seca-Chr1 1831229 1833936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00149 46 478 Eukaryotic Initiation Factors Gene Family AT1G36730 63.146 1.35e-178 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00149 K03262 - gmx:100777906 698.738