Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00146 ATGATGTTTCACATTGCTGTTATCATTTACTATATGCAGGATATCATAGTCCCGTCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATGGTTCCAGGAATCCCTATTAAACCTATGCTTGCGAAGATCACCAATGGCATTCCCCAAGCATTGAAGCTATTTCAAAATAAAGCATTTACATGTGAATATAAATATGATGGTCAGCGAGCTCAAATTCACAGATTAATTGATGGTTCAATTCGTGTTTTTTCAAGAAATGGAGATGAATCAACTTCGAGATTTCCTGATCTGATTGACATAATTAAAGAATCCTGCAAGCCTGTTGCATCAACTTTCATACTGGATGCAGAGGTTGTTGGTATTGATAGAAAAAATGGATATAGGATTATGTCTTTCCAGGAGCTATCTTCACGTGGGAGAGGAAGCAAAGATACTTTAGTTACTACAGAGAGCATAAAGGTGGGTATTTGCGTCTTTGTCTTTGATGTCATGTTCGCAAATGGAGAGCAGTTATTGGGTTTTCCTCTCCGCCTAAGACGAAAGTATCTGAAGGATTTGTTTTATGATGAAAAACCTGGGTATTTTGAATATGCAAAAGAAACAACTGTTGAAGCAGATGATGCTTGCTTAACGTGTGAAGCTACATTAACTAAGATAAATGCTTTCCTGGAAGATGCCTTTCGCTCTTCATGTGAAGGAATTATGGTGAAATTATTGGATGTTGATGCTGGGTATTCTCCATCAAAGCGTTCTGACAAATGGTTAAAGGTCAAGCGAGATTATGTGGAAGGATTAAATGACACTCTTGATTTAGTACCAATCGGCGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTATGGCATGTTTCAATCCTGAAAATGAGGAGTATCAAAGTGTATGTCGTGTGATGTCTGGGTTCTCAGATTCATTTTATATAGAGGTATAA 975 0.3754 MMFHIAVIIYYMQDIIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFQNKAFTCEYKYDGQRAQIHRLIDGSIRVFSRNGDESTSRFPDLIDIIKESCKPVASTFILDAEVVGIDRKNGYRIMSFQELSSRGRGSKDTLVTTESIKVGICVFVFDVMFANGEQLLGFPLRLRRKYLKDLFYDEKPGYFEYAKETTVEADDACLTCEATLTKINAFLEDAFRSSCEGIMVKLLDVDAGYSPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLMACFNPENEEYQSVCRVMSGFSDSFYIEV. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00146 324 Gene3D - 267 324 IPR012340 -
Seca1g00146 324 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 66 74 IPR016059 GO:0003909
Seca1g00146 324 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 14 323 - -
Seca1g00146 324 CDD Adenylation_DNA_ligase_I_Euk 33 265 - -
Seca1g00146 324 ProSiteProfiles ATP-dependent DNA ligase family profile. 153 300 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca1g00146 324 NCBIfam ATP-dependent DNA ligase 15 318 IPR000977 GO:0003910|GO:0005524|GO:0071897
Seca1g00146 324 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 36 268 - -
Seca1g00146 324 Pfam ATP dependent DNA ligase domain 42 262 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Seca1g00146 324 FunFam DNA ligase 71 202 - -
Seca1g00146 324 Gene3D DNA ligase/mRNA capping enzyme 71 202 - -
Seca1g00146 324 Gene3D - 52 266 - -
Seca1g00146 324 SUPERFAMILY Nucleic acid-binding proteins 271 322 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00146 Seca-Chr1 1793953 1800331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00146 14 323 Core DNA Replication Machinery Family AT1G08130 43.548 2.82e-88 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00146 - - gmx:100807673 607.446