Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00145 ATGGATTTCCAATCTGAACCCCAAACCCTAGAACTAAACTCCATCCAGTTATTCCTCACCGCTCGCCAATCCCTCCAACTTTCACCACCCTCTCCACCACCCTCTTCTCTCCCAATCCCAACCTCCTTCCCCCACTCCAAACTCATCCCCAACACCCGCTTCCTCATCGACGCCTTCCACCACGCCGGAAGCCACTTCTCCGCCTCCTATTTCCTCTCCCACTTCCACTCCGACCACTACTCTCCTCTCTCCTCCTCCTGGTCCCACGGCATCATCTTCTGTTCCCCCACCACCGCTCGTCTTCTCCTTCACGTCCTCAAAATCCCTTCCCCCTTCATCCACCCTCTCCCCCTCAACCAACCCGTTCACATCGACGGTTCCAGAATCACCCTCATTGATGCCAACCACTGCGTCGGCGCCGTTCAATTCCTCTTCGAGGTCCCCTCCAATGGAACCTTCCGGAGGTACGTTCACACAGGCGATTTCCGGTTTTGTAAGTCCATGTTGTTGGAATCTTCACTTGCTCCTTTTGTTGGTGCTGATGCTGTGTTTTTGGACACCACTTACTGTCACCCTAAGTTTCTGTTTCCCTCACAAGAGGAGTCTGTTGATTATGTTGTTAATGTTGTGAGTGAGTGTGATAGTGATGGAGTGTTGTTTCTTGTTGCTACTTATGTCGTTGGGAAGGAGAGGATTTTGCTTGAGATAGCGCGGAGGTTTAACAAAAAGATACACGTGGATGCTAGGAAGATGGAGATTTTGCGGGTTCTTGGGTATGGGGAGAGTGGTGAGTTTACGGAGGATGGATTGGAGACTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACATGGCCTTATTTTAGGCCTAATTTTGTTAAAATGAAGGAGATTATGACTGAGAGAGGGTACTCCAAGGTTGTGGGGTTTGTGCCAACTGGATGGACCTATGAGGTGAAGCGCAATAGGTTTGCGGTCAGGTCCAAGGATTCGTGTCAGATTCATCTTGTGCCATATAGTGAGCATTCAAACTATGATGAACTCAGGGAATATGTGAAGTTTTTGAAACCCAAACGTGTTGTTCCGACGGTGGGTTTGGATGTTGAGAAAAGTGACAGCAAACATGCTAACAAAATGAGAAAGTATTTTGCTGGGTTGGTTGATGAGACAGCCAACAAACAGGAGTTTTTAAGGGGTTTTCATCGTGACACTGGTGAAGTGAGTTTCAAGGTTGAGAAGGATGTTAGTGATGCTCTTGAACCAGGGCAAAGCTTGGAGAAAGGAGTCAAGCCATCTGATGTGGAAGGTGATAAAAGTATTAATCTAGGTCCTACTTGCACGCGAGATTCTACTATACTGAATGATGAAGAAAAGGAGAAAATCATTCAAGAACTTAGTTGTTGTTTGCCTGCATGGGTCACTCGAAGTCAGGTGTTAGATCTGATCAGCATCTCAGGGAAAAATGTTGTTGAAGCTGTTTCTAATTTCTACGAACGTGAAACTGAATTTCATGAGCAAGTAAATTCCTGTCAAACTTCAGTTTCAACATCCAAATGCTGCTCATCAAATAACACTGATTCACTTTCTAAATCACCCCTTACAACAATTGACACACACAAAAATGTTGACATTTTTCCAAGTCAAGACTCCAAATTAACTAATCTGAGGCATGCAGTACCAAGTCGTGTTTCCCCTGCCAAAAGAAAGAGTAGTGAAAGTAAGCCAAACAAGAAAGTAAAAGTCAAAGCAAAATCAGACTCAAGTGGTTCAAAGCAGTCAACAATAACAAGATTCTTCAGCAAAGTAATGCCTAAGATGCCAGGTGGTACTCAGTCTGATCATTTTGGATCAAAGCTTGACCAAAGCTCTAAAGTTGAAGACTTGCTGCCAACTGATGTTGAAAAGTTGTACAAGGATGAGATTGATCAGTTTATGCAAATAATAAATGGGAATGAGTCATCAAAAAAGTATGCCATCACTGTAATTGAGAAGACAAAAGGAGATGTCAATAAGGCATTGGATATTTATTACTGTAATTCTGGCAATCTTTGTGAAAATAAAATATCAGTTCAAGAGGAGTGCAAAATTGATAAACCTTTAGAGAAGAAGTATGTGTCACAGGAATTGAGAGTTATACCTGATATTTCTGTGCAGAGAGTTTTAAGAGATAATGTAGGTGCAACTTATGTATCTCTACCACCTGAGAAATACAACCCCAAGGAACATGCGTGTTGGAGAGATGGACAGCGTGCACCGTATTTACATCTTGCACGAACCTTCGACCTGCTTGAGGATGAGAAAGGAAAGATAAAAGCTACTTCAATGTTATGCAATATGTTCAGAAGTTTGTTGGCCTTGTCTCCAGAAGATGTGCTTCCTGCTGTGTATCTATGTACAAATAAAATTGCTGCAGACCATGAAAATGTGGAACTGAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCATGTGGAACAAATCGATTGAAAATAAGGGAGATGTATAACAAATTTGGAGATCTTGGTGATGTTGCTCAAGAGTGTCGTCAAACACAGAGATTGCTTGTACCACCTACACCACTTCAAATTAAGGATGTTTTCTCTGCACTACGAAAGATAAGTGTACAAACAGGCAATGGAAGCACATTTCGGAAGAAAGGCATCATTGTTCATCTCATGCGTTCCTGCCGCGAGAAGGAGATTAAGTTTCTTGTTCGGACCTTGGTAAATATCTCATTTTGTCTTGTTTTGTGGGTGAATAGTTTAGAGGGGGGGCTTACCTCATTTCAAGGTTACGGCTTGCCACAAGCCTCAATAGGCTTCCAGTGGTGCTTACAAATTGTGTTGCATTTTTTATAA 2868 0.4299 MDFQSEPQTLELNSIQLFLTARQSLQLSPPSPPPSSLPIPTSFPHSKLIPNTRFLIDAFHHAGSHFSASYFLSHFHSDHYSPLSSSWSHGIIFCSPTTARLLLHVLKIPSPFIHPLPLNQPVHIDGSRITLIDANHCVGAVQFLFEVPSNGTFRRYVHTGDFRFCKSMLLESSLAPFVGADAVFLDTTYCHPKFLFPSQEESVDYVVNVVSECDSDGVLFLVATYVVGKERILLEIARRFNKKIHVDARKMEILRVLGYGESGEFTEDGLETNIHVVGWNVLGETWPYFRPNFVKMKEIMTERGYSKVVGFVPTGWTYEVKRNRFAVRSKDSCQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHANKMRKYFAGLVDETANKQEFLRGFHRDTGEVSFKVEKDVSDALEPGQSLEKGVKPSDVEGDKSINLGPTCTRDSTILNDEEKEKIIQELSCCLPAWVTRSQVLDLISISGKNVVEAVSNFYERETEFHEQVNSCQTSVSTSKCCSSNNTDSLSKSPLTTIDTHKNVDIFPSQDSKLTNLRHAVPSRVSPAKRKSSESKPNKKVKVKAKSDSSGSKQSTITRFFSKVMPKMPGGTQSDHFGSKLDQSSKVEDLLPTDVEKLYKDEIDQFMQIINGNESSKKYAITVIEKTKGDVNKALDIYYCNSGNLCENKISVQEECKIDKPLEKKYVSQELRVIPDISVQRVLRDNVGATYVSLPPEKYNPKEHACWRDGQRAPYLHLARTFDLLEDEKGKIKATSMLCNMFRSLLALSPEDVLPAVYLCTNKIAADHENVELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLVPPTPLQIKDVFSALRKISVQTGNGSTFRKKGIIVHLMRSCREKEIKFLVRTLVNISFCLVLWVNSLEGGLTSFQGYGLPQASIGFQWCLQIVLHFL. 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00145 955 MobiDBLite consensus disorder prediction 559 595 - -
Seca1g00145 955 MobiDBLite consensus disorder prediction 603 622 - -
Seca1g00145 955 Pfam DNA repair metallo-beta-lactamase 263 366 IPR011084 -
Seca1g00145 955 Gene3D - 195 343 - -
Seca1g00145 955 Gene3D - 49 365 IPR036866 -
Seca1g00145 955 Pfam DNA ligase N terminus 753 911 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca1g00145 955 Gene3D - 730 913 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca1g00145 955 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 732 912 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Seca1g00145 955 FunFam DNA ligase 195 343 - -
Seca1g00145 955 SUPERFAMILY Metallo-hydrolase/oxidoreductase 50 366 IPR036866 -
Seca1g00145 955 CDD SNM1A-1C-like_MBL-fold 44 192 - -
Seca1g00145 955 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 40 539 - -
Seca1g00145 955 MobiDBLite consensus disorder prediction 568 586 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00145 Seca-Chr1 1786473 1792031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00145 735 911 Core DNA Replication Machinery Family AT1G08130 38.418 4.56e-36 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00145 - - gmx:100807673 1349.73