Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00134 ATGCAAGTGCAGGAGGAGAAACTCCAACAGTTTTGGCAGAAGCAATTGCATAATATCAATGCCATTGGAGAATTGAAGAGCCAACAACAATTGTCATTGGCTGGAATTAGAAGAATGATGAAATCTGAAGGGCAGATGATTAGTGCTGAAACTCCATTGTTGATGGGAAAAGCATGTGAGATTTTCATTCAGGACCTCGCCTATCGTGCTTGGATGCATGCTGGGGAGGCTAATAAACGCACATTACAACCTCATGATGTTGCCAAGACCATTATGCAAACTGATGTCTTTGAGTTCTTGAATGATGTTCTTCCAAATGAACTCATACATTACTATGCTTATGGTGGCAAGGAAGAGGATGTTGGAAACATTGTAGAAGGGGAGCATGTCATGCCTCATGTTGATGCTAGTTTTATGGAAGATCTTATGATGAATATAGGTCTTGTAAGTTCTGGAAATTGTGTAGAAGAAAATCAAAATCCCCTGCCTCATGCTGCTGGTTTTATGGAAAATCCTATGATGAATATGGACAATGTCAGTACTAAAAACTTTGCAGAAGACGTTATACCTCATGCTATTGGTCTGATGGGAATTCCTACGAATATGGGCAATGACCTGGTGGCAGGAAATCAACAATCTTCCCATCCCTCCATGATGCAGTCGCAATTAATGCCTTCAGATCAATTACCTTACAATTGTTATCCCAATGACATGATGGCAAGAAGCTCACATTTCCCCCCACCCTCCATGATACAACCATCATTTGTGCCTTTAGATCAACCGCCTTACGAAAGTGACATTGACATGGTGGTAAGTAACCAACAATCTGTTCAGCTGGACATGATGCAACCACCACCATTTATGCCATTAGATCAATTACCTTTCAATTGTCATCCCAAGTAA 903 0.4086 MQVQEEKLQQFWQKQLHNINAIGELKSQQQLSLAGIRRMMKSEGQMISAETPLLMGKACEIFIQDLAYRAWMHAGEANKRTLQPHDVAKTIMQTDVFEFLNDVLPNELIHYYAYGGKEEDVGNIVEGEHVMPHVDASFMEDLMMNIGLVSSGNCVEENQNPLPHAAGFMENPMMNMDNVSTKNFAEDVIPHAIGLMGIPTNMGNDLVAGNQQSSHPSMMQSQLMPSDQLPYNCYPNDMMARSSHFPPPSMIQPSFVPLDQPPYESDIDMVVSNQQSVQLDMMQPPPFMPLDQLPFNCHPK. 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00134 300 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 89 IPR003958 -
Seca1g00134 300 SUPERFAMILY Histone-fold 42 106 IPR009072 GO:0046982
Seca1g00134 300 Gene3D Histone, subunit A 1 106 IPR009072 GO:0046982
Seca1g00134 300 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 4 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00134 Seca-Chr1 1635373 1638267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00134 11 127 CCAAT-HAP5 Transcription Factor Family AT5G63470 42.857 3.98e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca1g00134 CBFD_NFYB_HMF 2.8e-10 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00134 - - gsj:114370134 133.65