Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00132 ATGAAACCCCTGCTTCAGTACCCTTGTTCCATTTTAATTTTCTCGGTTATTACACTTGTGATCTCAATCAATATTCCAACATCTCTTGGTGAGGATGATAGCTACTACTACACCAACTGCAATACTGCTTTTACCTGCGAAGGCAGCAATATCAAAACTCTCAAGTATCCATTCTTTGGAGGAAACAGAGATTGGTATTGCGGTCAACCTGGCTTGGATCTCATATGCGAAGACAGTGCCCCCAAGATGACCATCAATTCCATCAAATACCGTATTCTTGATTGGGACAGCACAACACAGAAGCTCAAAGTCGCTAGGGACGATTATTACTCGAGTAGTGTCTGTTCTGTGAGTGATTACAAGAACACCACATTTGATAACACATTGTTTGAGATTCAATATGATGGTGGGTTTGTTACGCTGTTATACAGTTGCACTTCAACAGAAAACTTCCAGAATCAGAATCCGTATCGTAGTGACTGCGGTGAAAGTAAAACTGTATACTACGTTCTAGAACCTTTGTATTCTCCCCTTTGTAGTGCGAGTATTGTGATTCCCATTTTGGGACAGCAAGTTTCATCACTTGCATCTTCTCCCAATAGAATAGACGATGCATTAAAGCAAGGTTTTGAGCTGAGATGGACGGGAGATTATAGGAAGTGCACGGCATGTATTGAATCTGGTGGAGAGTGTGGCTACTATGATGGAGCATTCAGATGTTTATGCAAAATTGGAACTCATACATCTTCATGCACTGGTGAAGTAGCAAGGGTTACCATTATGTCAGAGAGTTACAGAGTTCTTGAAGTCAGTGATTCTAATCATGAACTCAAAGTTGTAAGAAATGACTACTGGAATAATATTTGTCCCACAACCCTCAAGAACACCACTTTAGGTTGCAGTTTATTTGATTATGGTTCAGATTCTCAGAACCTGACTCTCTACTATGATTGTCCTTCCCCTACTTTTCCTCTACCAGATAGCTTTTCCCCTCAGTTTAATTGCAGTATAAATGGAACTCAAATGCTTAACTATTTTGTGATGGAGAGCATCCTAGAAAATGCTGAGACTTCGGTCTCATTGAGTGAAATAATGGGAACATGCAAATCTAGAGTCATTGTTCCAATTTTGGAGTCAGAAGCTAAAGTGATAGAGACAAATTCAACCGTGGAAAATCTGAAGGCTGCTCTTGATAATGGTTTTGGCTTGGAGTGGAATGCAAACAATAGTTTGTGTGATGAATGCCAAAACTCTGGTGGTCATTGTGGTTATGACCCAAGCTCAACCATCTTCATCTCCTTCTCTATCCACCATGCCACGTCGTCATCCCCTCATGCACCACTCTCTAGTTGCCACAACACCACCTTCAACTGCGGCACCATAACCAACCTTTCCTACCCTTTCACCGGCGGTGACCGCCCCTCCTTCTGTGGGCCACCACGGTTCCATTTAAGCTGCAACAACGGTGTTCCTGAGTTGAACATCTCCTCAGTGAGTTACCGAGTCCTTCAAATCAACTCAGTAACTCGCACCCTCACCTTAGCAAGATTAGATCTTTGGAACAACACATGTACCCATAACTACGTTAACTCAACTTTTGATGAGACCGTCTTTAGCTATGGTTCAGGCAACCGGAACCTCACCTTGTTCTATGGGTGCAAAGCCACTACTCAATTGACCAGTACGCCAGATAATTTGTTTCACTGCGAGATTAATGGGAATAAGAGTGATTCTTATTCTTTAGTTGGTCCACTTCCTTTGGACCCTGTTCTTAGCGTTGTTGAATGTGATGATAATGTTGGGGTGGCAATTCTGGACGAGCAGGTTGATAGGCTTGTAAAGAACCGTTCTTTGCTTAGGGAGATTTTGATGAAGGGATTTAATGTGAATTATAGCAATCCTTATGAAAATGAATGCTCTGAGTGTCTTGGTTCTGGTGGCCAGTGTGGGTTTGATTCTGATGAGAATGAACCGATTTGTATTTGTGGTGATCGGTTGTGTACATTTCCAGGTATTCCAGCTTTTCTTTTGGTCAACTTTGGTGGCGTTGTTGCAGGAGTTGCTGCCCTTGTTGGCATTCTTGGCTGTGTGTGCTTTATGGTGAGAAGAAAGAGAAGAATTGCTAAGCAATCAACAAGCAAAGACCTCCTCATGCATAATTCAAGCAGTGTCGCTCTTACCTCTACTACTAATTCGTCTCAAACTCAAAGTGTCTCTTCTTACCCTTCTTCCAAGTCTAGCACAGTACCAAGGAGTTACTACTTTGGTGTTCAGGTGTTTACCTATGATGAACTAGAGGAAGCTACCAAAAATTTTCACACTTCAAGAGAACTTGGTGAGGGAGGTTTTGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTGTGGTTGCAGTGAAACGCCATTATGAAAGCAATTTTAAGCGTGTTGAGCAGTTCATGAATGAAGTTCGGATTCTAGCCGGGTTAAGGCATAAGAACCTGGTGACACTCTATGGATGCACCTCAAGACAAAGCAGAGAACTTCTCCTTGTTTATGAATTCATACCTAATGGAACTGTGGCTGATCATCTTCATGGAACACGATCAAAATCAACTTTGCTCCCTTGGCCTGTAAGATTGAACATTGCAATGGAAACAGCTGAAGCACTAGCCTACCTCCATGCATCAGATGTCATACACCGTGATGTTAAATCCAACAACATTCTCTTAGATGATAAATTTCATGTTAAGGTTGCTGATTTTGGCCTCTCACGGTTGTTCCCAACTCATGTCACACATGTTTCAACTGCTCCACAGGGTACCCCTGGTTATGTTGACCCTGAGTATTACCAGTGCTACCAACTCACTGATAAAAGTGATGTTTATAGCTTTGGGGTTGTCTTAGCTGAGCTCATATCATCATTACAAGCTGTGGACATTAGCAGGCATCGCAGTGATGTGAACTTAGCTAATATGGCTGTCAACAAAATTCAGAACCAAGAATTGCATGAGTTGGTTGATCCATATATTGGATTTGAAAAAGACCCTGCTGTGAGGAGGATGACAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAGCAGCAGAGAGACATGAGACCTTCCATGGATGAGGTGCTGGAAATCTTGAGAGGAATCAAAAGTGATGAAATTGACACAAGGGAAGCAAAAGTAGTGGATGTTAGGACAGATGAACTTGTACTTTTGAAGAAGGTTCCTTCCCCGGTTTCACCAGATTCAGTTGCTGATCATAAATGGGTTAGCGGCTCTTCCACTTCTACATCTTATTCCTCATAG 3300 0.423 MKPLLQYPCSILIFSVITLVISINIPTSLGEDDSYYYTNCNTAFTCEGSNIKTLKYPFFGGNRDWYCGQPGLDLICEDSAPKMTINSIKYRILDWDSTTQKLKVARDDYYSSSVCSVSDYKNTTFDNTLFEIQYDGGFVTLLYSCTSTENFQNQNPYRSDCGESKTVYYVLEPLYSPLCSASIVIPILGQQVSSLASSPNRIDDALKQGFELRWTGDYRKCTACIESGGECGYYDGAFRCLCKIGTHTSSCTGEVARVTIMSESYRVLEVSDSNHELKVVRNDYWNNICPTTLKNTTLGCSLFDYGSDSQNLTLYYDCPSPTFPLPDSFSPQFNCSINGTQMLNYFVMESILENAETSVSLSEIMGTCKSRVIVPILESEAKVIETNSTVENLKAALDNGFGLEWNANNSLCDECQNSGGHCGYDPSSTIFISFSIHHATSSSPHAPLSSCHNTTFNCGTITNLSYPFTGGDRPSFCGPPRFHLSCNNGVPELNISSVSYRVLQINSVTRTLTLARLDLWNNTCTHNYVNSTFDETVFSYGSGNRNLTLFYGCKATTQLTSTPDNLFHCEINGNKSDSYSLVGPLPLDPVLSVVECDDNVGVAILDEQVDRLVKNRSLLREILMKGFNVNYSNPYENECSECLGSGGQCGFDSDENEPICICGDRLCTFPGIPAFLLVNFGGVVAGVAALVGILGCVCFMVRRKRRIAKQSTSKDLLMHNSSSVALTSTTNSSQTQSVSSYPSSKSSTVPRSYYFGVQVFTYDELEEATKNFHTSRELGEGGFGTVYKGELKDGRVVAVKRHYESNFKRVEQFMNEVRILAGLRHKNLVTLYGCTSRQSRELLLVYEFIPNGTVADHLHGTRSKSTLLPWPVRLNIAMETAEALAYLHASDVIHRDVKSNNILLDDKFHVKVADFGLSRLFPTHVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLAELISSLQAVDISRHRSDVNLANMAVNKIQNQELHELVDPYIGFEKDPAVRRMTTAVAELAFRCLQQQRDMRPSMDEVLEILRGIKSDEIDTREAKVVDVRTDELVLLKKVPSPVSPDSVADHKWVSGSSTSTSYSS. 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00132 1099 ProSitePatterns Serine/Threonine protein kinases active-site signature. 892 904 IPR008271 GO:0004672|GO:0006468
Seca1g00132 1099 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 256 IPR044652 GO:0004672
Seca1g00132 1099 Gene3D Transferase(Phosphotransferase) domain 1 849 1061 - -
Seca1g00132 1099 Pfam Wall-associated receptor kinase C-terminal 590 664 IPR032872 -
Seca1g00132 1099 Pfam Wall-associated receptor kinase C-terminal 335 431 IPR032872 -
Seca1g00132 1099 Pfam Wall-associated receptor kinase C-terminal 177 243 IPR032872 -
Seca1g00132 1099 SMART serkin_6 772 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00132 1099 Gene3D Phosphorylase Kinase; domain 1 744 848 - -
Seca1g00132 1099 CDD STKc_IRAK 778 1047 - -
Seca1g00132 1099 Pfam Wall-associated receptor kinase galacturonan-binding 40 105 IPR025287 GO:0030247
Seca1g00132 1099 Pfam Wall-associated receptor kinase galacturonan-binding 451 515 IPR025287 GO:0030247
Seca1g00132 1099 MobiDBLite consensus disorder prediction 1085 1099 - -
Seca1g00132 1099 ProSitePatterns Protein kinases ATP-binding region signature. 778 800 IPR017441 GO:0005524
Seca1g00132 1099 FunFam Wall-associated receptor kinase-like 20 849 1057 - -
Seca1g00132 1099 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 749 848 - -
Seca1g00132 1099 Pfam Protein kinase domain 772 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00132 1099 SUPERFAMILY Protein kinase-like (PK-like) 747 1050 IPR011009 -
Seca1g00132 1099 ProSiteProfiles Protein kinase domain profile. 772 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00132 1099 MobiDBLite consensus disorder prediction 727 748 - -
Seca1g00132 1099 MobiDBLite consensus disorder prediction 1075 1099 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00132 Seca-Chr1 1613957 1621175 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00132 456 1093 Receptor kinase-like Gene Family AT1G25390 42.462 8.91e-142 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca1g00132 Pkinase 2.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00132 - - cam:101490779 1450.26