Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00127 ATGAAGTCCCCTGAGCTTCAATCCTCCGTCATCAACGACCTCGTCCTCCTCTCCTGCGTCGGTCTCCGTCCTGTCATGGTTCACGGCGGCGGTACCGAGATCAACAATTTGCTCGGCCGTCTCAACATTCAGGCCGTCTTCCGTGACGGTCTCCGAGTCACCGATGCTAAAACCATGGAGATCGTCTCCATGGTCCTCGTTGGGAAGGTAAACAAAACCCTAGTCTCTCTCATTAACAAGGCTGGCGCCACCGCCGTTGGTCTCTCCGGTATGGATGGCCGTCTCCTCACGGCTCGTCCTAGCCCTAAAGTCGCTGATCTAGGGTTTTTCGGCGAGGTCTCTAGAGTGGATCCTACCGTTCTGCGGTCGCAGATCGACAGCAGTCACATTCCAGTGGTGACGTCTGTGGCTGCGGATGAGTTCGGGCAGCCGTACAACATCAATGCAGACACGGTGGTCGGAGAATTTGCGGCTGCGCTGGGAGCTGAGAAGTTGATACTGTTGACTGATGTAGCGGGGATATTGGAGGATCGGAATGACCTGAATAGCTTGGTGAAGAAGATTGATATAAAAGGGGTGAAGAAGATGATGGAAGATGGTAAGGTTGGTGGTGGGATGATTCCTAACGTGAATTGTTGTGTGCGATCCCTCGCACAAGGGGTCACCACAGCTAGTATTATTGATGGCAGGGTACGCCACTATTTGCTACTAGAGATTTTGACTGATGAAGGGAACCTTCCGAGGCACACCGTTCACATCGCCATCAGCCACCGGAGCTTACCGTGCCACCGTCATCACCGGCGTTCCATTCACCAGGTTGCTGATTTTGGCCTCTCACGGTTGTTCCCAACTCATGCAACTCATGTTTCAACTGCTCCACAGGGTACCCCTTGTTATGTTGACCCTGAGTATTACCAGTGTTACCAACTCACTGACAAAAGTGATGTTTATAGCTTTGGGGTTGTCATAGCTGAGCTCATATCATCATTACAAGCTGTGGACATTAGCAGGCATCGCAGTGATGTGAACTTAGCTAATATGGCTGTCAACAAAATTCAGAACCAAGGATTGCATGAGTTGGTTGATCCATATATTGGATTTGAAAAAGACCCGCTGTGA 1119 0.5085 MKSPELQSSVINDLVLLSCVGLRPVMVHGGGTEINNLLGRLNIQAVFRDGLRVTDAKTMEIVSMVLVGKVNKTLVSLINKAGATAVGLSGMDGRLLTARPSPKVADLGFFGEVSRVDPTVLRSQIDSSHIPVVTSVAADEFGQPYNINADTVVGEFAAALGAEKLILLTDVAGILEDRNDLNSLVKKIDIKGVKKMMEDGKVGGGMIPNVNCCVRSLAQGVTTASIIDGRVRHYLLLEILTDEGNLPRHTVHIAISHRSLPCHRHHRRSIHQVADFGLSRLFPTHATHVSTAPQGTPCYVDPEYYQCYQLTDKSDVYSFGVVIAELISSLQAVDISRHRSDVNLANMAVNKIQNQGLHELVDPYIGFEKDPL. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00127 372 FunFam Acetylglutamate kinase 1 248 - -
Seca1g00127 372 PANTHER N-ACETYLGLUTAMATE SYNTHASE 1 246 - -
Seca1g00127 372 Gene3D Transferase(Phosphotransferase) domain 1 242 371 - -
Seca1g00127 372 Pfam Protein tyrosine and serine/threonine kinase 268 329 IPR001245 GO:0004672|GO:0006468
Seca1g00127 372 SUPERFAMILY Protein kinase-like (PK-like) 271 330 IPR011009 -
Seca1g00127 372 Gene3D - 1 241 IPR036393 -
Seca1g00127 372 CDD AAK_NAGK-C 1 244 IPR041727 -
Seca1g00127 372 NCBIfam acetylglutamate kinase 5 226 IPR004662 GO:0005737
Seca1g00127 372 SUPERFAMILY Carbamate kinase-like 2 244 IPR036393 -
Seca1g00127 372 Hamap Acetylglutamate kinase [argB]. 1 244 IPR037528 GO:0003991|GO:0006526
Seca1g00127 372 ProSiteProfiles Protein kinase domain profile. 59 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00127 372 Pfam Amino acid kinase family 8 227 IPR001048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00127 Seca-Chr1 1598244 1600984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00127 272 367 Receptor kinase-like Gene Family AT1G25390 69.792 1.18e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca1g00127 AA_kinase 4.5e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00127 K00930 - gmx:100814183 420.624