Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00115 ATGAAGTCCCCTGAGCTTCAATCCTCCGTCATCAACGACCTCGTCCTCCTCTCCTGCGTCGGTCTCCGTCCTGTCATGGTTCACGGCGGCGGTACCGAGATCAACAATTTGCTCGGCCGTCTCAACATTCAGGCCGTCTTCCGTGACGGTCTCCGAGTCACCGATGCTAAAACCATGGAGATCGTCTCCATGGTCCTCGTTGGGAAGGTAAACAAAACCCTAGTCTCTCTCATTAACAAGGCTGGCGCCACCGCCGTTGGTCTCTCCGGTATGGATGGCCGTCTCCTCACGGCTCGTCCTAGCCCTAAAGTCGCTGATCTAGGGTTTTTCGGCGAGGTCTCTAGAGTGGATCCTACCGTTCTGCGGTCGCAGATCGACAGCAGTCACATTCCAGTGGTGACGTCTGTGGCTGCGGATGAGTTCGGGCAGCCGTACAACATCAATGCAGACACGGTGGTCGGAGAATTTGCGGCTGCGCTGGGAGCTGAGAAGTTGATACTGTTGACTGATGTAGCGGGGATATTGGAGGATCGGAATGACCTGAATAGCTTGGTGAAGAAGATTGATATAAAAGGGGTGAAGAAGATGATGGAAGATGGTAAGGTTGGTGGTGGGATGATTCCTAACGTGAATTGTTGTGTGCGATCCTTCGCACAAGGGGTCACCACAGCTAGTATTATTGATGGCAGGGGAACCTTCCGAGGCACACCGTTCACATCGCCATCAGCCACCGGAGCTTACCGTGCCACCGTCATCACCGGCGTTCCATTCACCAGATTTCTTCTTCATTCTCTTATTGATCTCCATTGTTGTTCTTCATTCTCTTTACTTGCAATAGTTGCTGATTTTGGCCTCTCACGGTTGTTCCCAACTCATGCAACTCATGTTTCAACTGCTCCACAGGGTACCCCTTGTTATGTTGACCCTGAGTATTACCAGTGTTACCAACTCACTGACAAAAGTGATGTTTATAGCTTTGGGGTTGTCATAGCTGAGCTCATATCATCATTACAAGCTGTGGACATTAGCAGGCATCGCAGTGATGTGAACTTAGCTAATATGGCTGTCAACAAAATTCAGAACCAAGGATTGCATGAGTTGGTTGATCCATATATTGGATTTGAAAAAGACCCGCTGTGA 1140 0.5 MKSPELQSSVINDLVLLSCVGLRPVMVHGGGTEINNLLGRLNIQAVFRDGLRVTDAKTMEIVSMVLVGKVNKTLVSLINKAGATAVGLSGMDGRLLTARPSPKVADLGFFGEVSRVDPTVLRSQIDSSHIPVVTSVAADEFGQPYNINADTVVGEFAAALGAEKLILLTDVAGILEDRNDLNSLVKKIDIKGVKKMMEDGKVGGGMIPNVNCCVRSFAQGVTTASIIDGRGTFRGTPFTSPSATGAYRATVITGVPFTRFLLHSLIDLHCCSSFSLLAIVADFGLSRLFPTHATHVSTAPQGTPCYVDPEYYQCYQLTDKSDVYSFGVVIAELISSLQAVDISRHRSDVNLANMAVNKIQNQGLHELVDPYIGFEKDPL. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00115 379 FunFam Acetylglutamate kinase 1 234 - -
Seca1g00115 379 ProSiteProfiles Protein kinase domain profile. 59 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00115 379 NCBIfam acetylglutamate kinase 5 226 IPR004662 GO:0005737
Seca1g00115 379 Gene3D - 1 242 IPR036393 -
Seca1g00115 379 Pfam Amino acid kinase family 8 227 IPR001048 -
Seca1g00115 379 CDD AAK_NAGK-C 1 230 IPR041727 -
Seca1g00115 379 SUPERFAMILY Protein kinase-like (PK-like) 276 361 IPR011009 -
Seca1g00115 379 Gene3D Transferase(Phosphotransferase) domain 1 261 378 - -
Seca1g00115 379 SUPERFAMILY Carbamate kinase-like 2 239 IPR036393 -
Seca1g00115 379 Pfam Protein tyrosine and serine/threonine kinase 278 336 IPR001245 GO:0004672|GO:0006468
Seca1g00115 379 Hamap Acetylglutamate kinase [argB]. 1 237 IPR037528 GO:0003991|GO:0006526
Seca1g00115 379 PANTHER N-ACETYLGLUTAMATE SYNTHASE 1 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00115 Seca-Chr1 1566292 1569032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00115 280 374 Receptor kinase-like Gene Family AT1G25390 70.526 1.12e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca1g00115 AA_kinase 2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00115 K00930 - gmx:100814183 397.897