Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00111 ATGAACATCAATTCCATCAAATACCGCATTCTTGATTGGGACAACGCAACACTGAAGCTCACAGTCGCTAGGGACGATTACTACTCGAGTAGTGTCTGTTCTGTGAGTGATTACAAGAACACCTCGTTTGATAACACATCGTTTCAAATCCAATATGATGGTGGGTTTGTTACGCTGTTATACCGTTGCACTTCAATCGAAAACATCCAGAATCAGAATCCGTATCGTAGTGACTGCGGTGATGGTAACACGGTCTACTACGTTCTCGCATCTTTGAACTCGCCCCTTTGTAGAGTCTGCAGTAACAATCTGTTTAGTTGTGGAGGAAACATAACAAACATTGGTTTTCCATTCTGGGGTGGCGATCGACCAGACAGGTGTGGCCACCCTCTGTTGCATCTCACCTGCGAAAGAAACATCAGCTACATAACAATCAAGGATGTCAAGTACGAGGTTTTGGAGGCCAATCCTAAAGATTATACTTTGAGAATCACCAGAGTGGACTACCTCTACTTTGAAGGATTATGCCCATCAAAACTAGTCAACACCACCCTTGATACTAAGCTCTTTGTTTATAGCTCTGAGTATAAGAATCTTACCCTTTTCTATGGTTGTCCTGCTTCAAATCCTTTCTCCTCTGCTGCAATTGGACGTCTTCCTTGTTTCACAAATGGGGATTTCGGTGAATTTCTATATACTCAGTTTGGATCTCTTGGCCCTCCTCTGTCTTGCAAACAAAGTGTGGTTGTTCCCGTTTCTCCGTCATGGATTGATATTAATGATTTCATTAAAACACAAGAGGCAATCAGAGCCGGATTTGTTGTGAGATGGATAGCAGGTCTTGAACAATGTCAAAATTGTACAAAAACAGGTGGAGTCTGCGGTTATGATGGGAATTCAAATCAAACAACGTGCTACCATTGCAATGATCAATCTTGTTCTAATTTCTCGCCAGATGCCAAAGCACCTCCATCTACAGTCCGTGCAAAAATGAAACCCCTGCTTCAGTACCCTTGTTCCATTTTAATTTTCTCGGTTATTACACTTGTGATCTCAATCAATATTCCAACATCTCTTGGTGAGGATGATAGCTACTACTACACCAACTGCAATACTGCTTTTACCTGCGAAGGCAGCAATATCAAAACTCTCAAGTATCCATTCTTTGGAGGAAACAGAGATTGGTATTGCGGTCAACCTGGCTTGGATCTCATATGCGAAGACAGTGCCCCCAAGATGACCATCAATTCCATCAAATACCGTATTCTTGATTGGGACAGCACAACACAGAAGCTCAAAGTCGCTAGGGACGATTATTACTCGAGTAGTGTCTGTTCTGTGAGTGATTACAAGAACACCACATTTGATAACACATTGTTTGAGATTCAATATGATGGTGGGTTTGTTACGCTGTTATACAGTTGCACTTCAACAGAAAACTTCCAGAATCAGAATCCGTATCGTAGTGACTGCGGTGAAAGTAAAACTGTATACTACGTTCTAGAACCTTTGTATTCTCCCCTTTGTAGTGCGAGTATTGTGATTCCCATTTTGGGACAGCAAGTTTCATCACTTGCATCTTCTCCCAATAGAATAGACGATGCATTAAAGCAAGGTTTTGAGCTGAGATGGACGGGAGATTATAGGAAGTGCACGGCATGTATTGAATCTGGTGGAGAGTGTGGCTACTATGATGGAGCATTCAGATGTTTATGCAAAATTGGAACTCATACATCTTCATGTACTTCAGAAATGGCCTCACCTCCAAATTCAGGTGCATCAGCAGTTGGCTTTGGAGCAACAATATTATTTGTTTGGATTATTTGTTACCATAAGAGGCGTATAACTTTTCGGCAAAAGTATGTCTTTAAGGAAAAAAGAAAATTTGTTGACCACAATGTGGAGGCTTTCATGAAAAGTTATGGTTCTTTTGCACCAAGGCGATATAGATATTCAGAAGTTAAAAGAATCACAAACTCATTTCTAAATAAACTAGGTGAAGGAGGATATGGTGTTGTCTACAAAGCAAGATTATCTGATGGTCGTCCTGTTGCCGTTAAAGTAATAAGTGATTCTAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACTTCTCATGTGAACATTGTCTCACTTTTGGGATTCTGTTATGATATGAACAAAAGAGTACTAATCTATGAATTCATGCCCAATGGTTCATTAGATAATTTCATCAATAAAACAGGATCTCCAAATGTGATTTGTCATTTTGATTGCAGCATGTTGTATAAAGTTGCACTTGGGGTTGCTCGAGGACTAGAATACTTACATCGAGGGTGCAATACAAGGATTTTACACCTTGATATTAAACCTCAAAATATTCTTTTGGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGACTTGCTAAAATATGCCAAAAGAAGGAGAGCATTGTGTCTATATTGGGCACAAGAGGAACTCCAGGGTACATTGCACCAGAAGTATTTAGTCGAGCATTTGGTGGTGTTTCTCACAAATCTGATGTGTATAGCTATGGTATGTTGATTCTTGAAATGGTTGGAGGAAGAAAGAATTATGATAATGGAGGATCACATACTAGTGAAATGTATTTTCCAGATTGGATATATAATGATCTTGAGCAAGGTAACATTCACACAAATTATTTGGCCATCACAGAGGAGGAAAATGAGATGGTAAGAAAGATAACCTTGGTGAGTCTATGGTGCATTCAAACAAATCCATCAGATAGGCCATCAATGAGTAAAGTAGTGGAGATGTTAGAAGGACCACTTCAGCAAGTTCCATATCCTCCAAAGCCTATCTTATATTCTCTTGAAAGGAGCCCATTACAAATTTCAGATATATCTTCAGACAATATGCAAGAGACAAATCCAATAACAACACAAAAGGATGGTTCTATGGAATTTAATGAGTAA 2955 0.3929 MNINSIKYRILDWDNATLKLTVARDDYYSSSVCSVSDYKNTSFDNTSFQIQYDGGFVTLLYRCTSIENIQNQNPYRSDCGDGNTVYYVLASLNSPLCRVCSNNLFSCGGNITNIGFPFWGGDRPDRCGHPLLHLTCERNISYITIKDVKYEVLEANPKDYTLRITRVDYLYFEGLCPSKLVNTTLDTKLFVYSSEYKNLTLFYGCPASNPFSSAAIGRLPCFTNGDFGEFLYTQFGSLGPPLSCKQSVVVPVSPSWIDINDFIKTQEAIRAGFVVRWIAGLEQCQNCTKTGGVCGYDGNSNQTTCYHCNDQSCSNFSPDAKAPPSTVRAKMKPLLQYPCSILIFSVITLVISINIPTSLGEDDSYYYTNCNTAFTCEGSNIKTLKYPFFGGNRDWYCGQPGLDLICEDSAPKMTINSIKYRILDWDSTTQKLKVARDDYYSSSVCSVSDYKNTTFDNTLFEIQYDGGFVTLLYSCTSTENFQNQNPYRSDCGESKTVYYVLEPLYSPLCSASIVIPILGQQVSSLASSPNRIDDALKQGFELRWTGDYRKCTACIESGGECGYYDGAFRCLCKIGTHTSSCTSEMASPPNSGASAVGFGATILFVWIICYHKRRITFRQKYVFKEKRKFVDHNVEAFMKSYGSFAPRRYRYSEVKRITNSFLNKLGEGGYGVVYKARLSDGRPVAVKVISDSKGNGEEFINEVASISRTSHVNIVSLLGFCYDMNKRVLIYEFMPNGSLDNFINKTGSPNVICHFDCSMLYKVALGVARGLEYLHRGCNTRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSILGTRGTPGYIAPEVFSRAFGGVSHKSDVYSYGMLILEMVGGRKNYDNGGSHTSEMYFPDWIYNDLEQGNIHTNYLAITEEENEMVRKITLVSLWCIQTNPSDRPSMSKVVEMLEGPLQQVPYPPKPILYSLERSPLQISDISSDNMQETNPITTQKDGSMEFNE. 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00111 984 Pfam Wall-associated receptor kinase galacturonan-binding 100 165 IPR025287 GO:0030247
Seca1g00111 984 Pfam Wall-associated receptor kinase galacturonan-binding 370 435 IPR025287 GO:0030247
Seca1g00111 984 MobiDBLite consensus disorder prediction 963 984 - -
Seca1g00111 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 782 794 IPR008271 GO:0004672|GO:0006468
Seca1g00111 984 ProSitePatterns Protein kinases ATP-binding region signature. 665 687 IPR017441 GO:0005524
Seca1g00111 984 SUPERFAMILY Protein kinase-like (PK-like) 638 934 IPR011009 -
Seca1g00111 984 Pfam Protein kinase domain 662 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00111 984 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 99 350 IPR044652 GO:0004672
Seca1g00111 984 Gene3D Phosphorylase Kinase; domain 1 633 733 - -
Seca1g00111 984 Pfam Wall-associated receptor kinase C-terminal 507 573 IPR032872 -
Seca1g00111 984 Pfam Wall-associated receptor kinase C-terminal 243 310 IPR032872 -
Seca1g00111 984 SMART serkin_6 659 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00111 984 ProSiteProfiles Protein kinase domain profile. 659 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00111 984 Gene3D Transferase(Phosphotransferase) domain 1 734 941 - -
Seca1g00111 984 FunFam PR5-like receptor kinase 734 943 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00111 Seca-Chr1 1528854 1540055 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00111 369 965 Receptor kinase-like Gene Family AT5G38260 41.774 4.18e-144 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca1g00111 Pkinase 5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00111 - - aprc:113862598 816.994