Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00110 ATGCATGGCTGCCTCACCATTCGAATCAAAACTAGTATAATGATGTTTGTCTCTGTCTCTAGAAGCTTCTTTTTCATCTTGTCAGCAGTACTAGGAGTACTCCTCTCCACCAGTACCGTGGCCATTGCCGATGATGATGGTGTCTATATGTCGAAGCTTCTCAATGCCTTGACCCCAACTCCCACTGGCTGGTCCCATGACACCAACTTCTGCACATGGGGAGGCGTCCATTGCAATGATCAATCCGGTCGTGTCACCTACATCGACCTCCCTTCAAGGTTAGTCAGACTCAAAGGGACAATCCCTTCTGATCTCAACTCACTCTCCGATCTCACCTATCTCAATCTCGCCAGCAATTCACTCACTGGGCCATTGCCTTCTCTTGCCAACCTCACCAGACTCAAAACTGTGTACCTCGACTTCAACACTTTCACGGGTCCCATTCCTGACTTGTCAAATTGCACCTATTTGTTTGATTTGCAGCTTTATAATAATACCTTAACCGGTATGGTTCCACCTTCATTGATGAGTCTCTCTGTCTTGAAGAATGTTTCTTTGGCTAACAATCGACTTCAGGGGCCGATACCTGTGTTTCTCCAGACTATGAAGGTCGATCTCAGTGGGAATAGCTTTTGCCGACCCGATGTGGGACCTTGCGATTCAAGGGTGATGACTTTGCTTCAAATTGCTGCAGCTTTTGGGTATCCACTCACATTGATGGATTCATGGAGTGGGAATGATCCTTGCAAGTACTTGAGATTCATTGTGTGTGCACCAGATGGGAAGATTGTTGCTGTTGATTTGGAGAAGCAGAATTTGAATGGAACAATCTCCCCTGCATTTGCCAATTTAACAAGTTTAGTCAACTTGACTCTAAGTGGTAATCATTTGATAGGTTCAATACCAGAGAGCTTCACAACTCTCTCACAACTTGAGCTTCTGGATGTATCCAACAATAACCTATCTGGACAAGTTCCCAAATTTCCACTAAAGATAAAGTTCATTACCGCAGGGAATGCTTTCTTGCTTCAGAGTTCTGGAAACGTTACTCCAGGCTCATCTTCAAAATGGAACCAACGGCTTAAGATTGTGATAGGTGCATCAACAGCTGGATGTGCAACAGTATTATTCTTTATTTTGATTATATGTTACCTTAAGAAGGGTACAAGTTTTCCACTAATGAGGATCTTATGGAAAAGAAGAAAATTTGTTGACCACTATGTGGAGAATTTCATGCAAAGTTATGGTTCTTTGGTGCCAAAGCGATATAGTTATTCAGAAGTTAAAGGGATGACAAACTCATTTCAAAATAAACTGGGTCAAGGAGGATATGGTGTTGTCTACAAAGCAAAATTACCTGATGGTCGACTTGTTGCTGTAAAAGTAATAACTGAGTCCAAGGGAAGTGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAAAACTTCTCATGTGAACATTGTCGCACTTTTGGGATTTTGTTATGATATGAACAAAAGAGCATTGATCTATGAATTCATGCCCAATGATGAGGACAATGAAATTGCAAGGAAGATGATTTTGGTGAGTCTATGGTGTATTCAAACGCACCCAATAGATAGGCCATCAATGAGTAAAGTGATGGAGATGTTAGAAGGACAACTTCAATCAATTCCATGTCCTCCAAAACTTGTCTTATATTCTCCTGGGAGGATACCATTACAGATTTCAAATTTATCTTCAAGCAATATGCAAGAGACAAATTCCATAACAATGCAAAAGGATGGTTCTGACTTGAACGAGATAAGAGCAAGAGGGTAA 1803 0.4132 MHGCLTIRIKTSIMMFVSVSRSFFFILSAVLGVLLSTSTVAIADDDGVYMSKLLNALTPTPTGWSHDTNFCTWGGVHCNDQSGRVTYIDLPSRLVRLKGTIPSDLNSLSDLTYLNLASNSLTGPLPSLANLTRLKTVYLDFNTFTGPIPDLSNCTYLFDLQLYNNTLTGMVPPSLMSLSVLKNVSLANNRLQGPIPVFLQTMKVDLSGNSFCRPDVGPCDSRVMTLLQIAAAFGYPLTLMDSWSGNDPCKYLRFIVCAPDGKIVAVDLEKQNLNGTISPAFANLTSLVNLTLSGNHLIGSIPESFTTLSQLELLDVSNNNLSGQVPKFPLKIKFITAGNAFLLQSSGNVTPGSSSKWNQRLKIVIGASTAGCATVLFFILIICYLKKGTSFPLMRILWKRRKFVDHYVENFMQSYGSLVPKRYSYSEVKGMTNSFQNKLGQGGYGVVYKAKLPDGRLVAVKVITESKGSGEEFINEVASISKTSHVNIVALLGFCYDMNKRALIYEFMPNDEDNEIARKMILVSLWCIQTHPIDRPSMSKVMEMLEGQLQSIPCPPKLVLYSPGRIPLQISNLSSSNMQETNSITMQKDGSDLNEIRARG. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00110 600 FunFam Nuclear pore complex protein NUP107 48 197 - -
Seca1g00110 600 Pfam Leucine rich repeat N-terminal domain 225 250 IPR013210 -
Seca1g00110 600 Pfam Leucine rich repeat N-terminal domain 44 79 IPR013210 -
Seca1g00110 600 FunFam Leucine-rich repeat receptor-like kinase 221 345 - -
Seca1g00110 600 ProSiteProfiles Leucine-rich repeat profile. 110 132 IPR001611 GO:0005515
Seca1g00110 600 FunFam serine/threonine-protein kinase PBS1-like 405 507 - -
Seca1g00110 600 SMART tyrkin_6 433 570 IPR020635 GO:0004713|GO:0006468
Seca1g00110 600 Gene3D Phosphorylase Kinase; domain 1 409 507 - -
Seca1g00110 600 ProSiteProfiles Protein kinase domain profile. 433 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00110 600 SUPERFAMILY Protein kinase-like (PK-like) 409 510 IPR011009 -
Seca1g00110 600 SUPERFAMILY L domain-like 63 327 - -
Seca1g00110 600 Pfam Protein kinase domain 436 519 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00110 600 ProSitePatterns Protein kinases ATP-binding region signature. 439 461 IPR017441 GO:0005524
Seca1g00110 600 Gene3D Ribonuclease Inhibitor 50 151 IPR032675 -
Seca1g00110 600 Gene3D Ribonuclease Inhibitor 221 344 IPR032675 -
Seca1g00110 600 Gene3D Ribonuclease Inhibitor 152 215 IPR032675 -
Seca1g00110 600 PANTHER OSJNBA0070M12.3 PROTEIN 32 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00110 Seca-Chr1 1521018 1523703 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00110 82 546 Receptor kinase-like Gene Family AT3G47570 30.909 2.37e-40 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca1g00110 Pkinase 9.1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00110 - - tpra:123922127 434.491