Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00107 ATGCTGCATACTTATCGAAGCAAGACTTGGAAGGAACAATGCGTTTGTGGTAATGATTTGAGGGGTTCAATACCAGAGAGCTTGACAACTTTGGCTCAACTTGAGTTTTTGGATGTTTCCAATAATAACTTATCTGGAGAAGTTCCCAAATTTGCATTCAAGGTGAAGTTAAATATGGCAGGTAATGTTTTGCTTAGTGCTTTTCCGGGAGGTGGAGAAAATGGATCTAGTCCATCTGCTGTTTATGGTTCTCCCGCTGATACACCAAGAGCAAGACAAACCCCATCTAAAAGACTACTATATGCTGCGTGGATAACAGGGGTGATCAGTTTTGTTGCTATAACTGTGTTTGTAATCATTTGGAAACGTAAGCAATATCTTAGTTTAGTACAAGAGTGGATCTTCAAGAAAACAAGAGCATTTCCTGGCCATAATATTGAGGATTTCATAACAAGTTATAATTTGATGATACCAAAAAGATATAGTTATGCCGAACTGAAAAGGATCACAAACTCATTTCGAGATAAATTAGGTCAAGGAGGATATGGTGTTGTGTACAAAGCAAGCTTACCTGATGGTCGTCATGTGGCAGTGAAAGTAATAAATGAGTCCAAGGGAAATGGAGAAGAATTCATAAATGAAGTTTCTAGCATTAGTAAAACGTCACGTGTGAACATTGTCTCACTTTTGGGTTTTTGTTATGAGTTGAACAAAAAAGCACTAATTTATGAATTCATGCCCAATGGTTCATTGGATAAGTTCATCTACAGAAGTGGATTTCCAAATGCTATATGTAATTTGGACTGGAACATATTGTACCAAATTGCAATTGGCATTGCTCAAGGACTAGAATACTTGCATCAAGGATGTATTTCAAGGATCTTGCATCTTGATATCAAACCTCAAAACATTCTTTTGGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGACTAGCTAAAATATGTCAAAAGAAGCAGAGTATTGTGTCCATGACAGGCACAAGAGGAACTATTGGTATATAG 1026 0.3665 MLHTYRSKTWKEQCVCGNDLRGSIPESLTTLAQLEFLDVSNNNLSGEVPKFAFKVKLNMAGNVLLSAFPGGGENGSSPSAVYGSPADTPRARQTPSKRLLYAAWITGVISFVAITVFVIIWKRKQYLSLVQEWIFKKTRAFPGHNIEDFITSYNLMIPKRYSYAELKRITNSFRDKLGQGGYGVVYKASLPDGRHVAVKVINESKGNGEEFINEVSSISKTSRVNIVSLLGFCYELNKKALIYEFMPNGSLDKFIYRSGFPNAICNLDWNILYQIAIGIAQGLEYLHQGCISRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKQSIVSMTGTRGTIGI. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00107 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 294 306 IPR008271 GO:0004672|GO:0006468
Seca1g00107 341 Gene3D Phosphorylase Kinase; domain 1 147 245 - -
Seca1g00107 341 Gene3D Ribonuclease Inhibitor 14 68 IPR032675 -
Seca1g00107 341 SUPERFAMILY Protein kinase-like (PK-like) 149 339 IPR011009 -
Seca1g00107 341 Gene3D Transferase(Phosphotransferase) domain 1 246 341 - -
Seca1g00107 341 PANTHER RUST RESISTANCE KINASE LR10-RELATED 144 340 IPR045874 GO:0004672
Seca1g00107 341 ProSitePatterns Protein kinases ATP-binding region signature. 177 199 IPR017441 GO:0005524
Seca1g00107 341 Pfam Protein kinase domain 175 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00107 341 SUPERFAMILY L domain-like 17 67 - -
Seca1g00107 341 ProSiteProfiles Protein kinase domain profile. 171 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00107 341 SMART serkin_6 171 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00107 341 FunFam Os07g0541700 protein 246 338 - -
Seca1g00107 341 FunFam serine/threonine-protein kinase PBS1-like 145 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00107 Seca-Chr1 1503688 1511060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00107 75 340 Receptor kinase-like Gene Family AT4G18250 47.584 5.81e-79 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca1g00107 Pkinase 2.3e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00107 - - cam:101489592 427.557