Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00094 ATGGGTGATGTTGATTATGATGCAACAAAATCCTCCATTCCCACTTGCACATCTCTAAAGCTCTTTGGCATCAACATTCACAATGAATCATCAACAACCACAGGTGGTGGTGGTGGAATTAGTAATTTGAAGATGAATGAATCATCTCCTCCTCCAGGTGATGGAAGAAAATATGAGTGTCAGTATTGTTGCAGAGAATTCGCAAACTCACAAGCATTAGGAGGACACCAAAACGCACACAAAAAAGAAAGACAGCTCTTGAAACGCGCTCAAATGCAAGCTGCTCATCGTGGCTTTATCATCCAAAACACAACAATCCTATCACCACCACCACTACTGCCACAACATCATCATCATTACCAGCTGGCGGCACCACCGTCTCAGCCATGGCTATATCATCAATATTATTCATCATCATCAGGAGGAGGAGCATTTGTGGCTCCTCAAAGACGTATCTATGCTGCTGTCACAACTGATGGCCGTGTACGCCGCCACCCTCTGCCGCCTGGCTTTAATGGCGGCGATGGTGGTTTGAATTTGCATCTTAGTTTATAA 555 0.4468 MGDVDYDATKSSIPTCTSLKLFGINIHNESSTTTGGGGGISNLKMNESSPPPGDGRKYECQYCCREFANSQALGGHQNAHKKERQLLKRAQMQAAHRGFIIQNTTILSPPPLLPQHHHHYQLAAPPSQPWLYHQYYSSSSGGGAFVAPQRRIYAAVTTDGRVRRHPLPPGFNGGDGGLNLHLSL. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00094 184 PANTHER ZINC FINGER PROTEIN 5 12 184 IPR044299 GO:0010090
Seca1g00094 184 MobiDBLite consensus disorder prediction 30 48 - -
Seca1g00094 184 MobiDBLite consensus disorder prediction 30 52 - -
Seca1g00094 184 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Seca1g00094 184 FunFam Zinc finger protein 6 47 107 - -
Seca1g00094 184 SUPERFAMILY beta-beta-alpha zinc fingers 55 85 IPR036236 -
Seca1g00094 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Seca1g00094 184 Gene3D Classic Zinc Finger 41 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00094 Seca-Chr1 1412027 1412581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00094 17 145 C2H2 Transcription Factor Family AT1G67030 47.945 2.73e-28 102