Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00091 ATGAATGATTCTACGGTGAAGAGTTTGGCCATTGCGGATAAGAAGGTACAAAAACCTGGTGGCTGTGTTGGCATTTTCTTTCAGCTCATTGATTGGAAGAGGAGACTCTCTAAGAAAAAGCTCTTCTCCAAGAAACTCCTTCCTCCTGCTCGTGCAAAAAAGTTTAGGGGAGATGAAAAAATGCCAAGTTCCAAGCTCCACTTGATTGCTAATGAGAATAGTGGTGGTTTCCCTAGTGCCAGAAAAAGTGGGAATCATGGTGTAATTGTAGATCAAAAGAGTGAAATGAGAGTTCCGAGTTTGGTAGCTAGGTTGATGGGTCTAGAATCTATTCCATCAGCTCAGCGAGATAAGTCAAAGAAAGCTTCATATTCTCATGGTTGTGGTGATGGAAAGAAAGAGTCTTTGGCTAATCATTGTGAGTTGGATAGGCAAGGTGTTGATTTAGAAGTGGGAGTTGTAAAGTATGATTCAAGACCTCAGAAACTTCAGAAAACTGGGGCTTGTGAGAGAAAGGCAGTGACTAGGTTTGGGGCAGAAGCCCTTCATATTAGGAGTGTTTTGTCACGAGCAAAAAAGTATAACCATCAACATCATCATCCAAAGCTTGCTTCTCCTTTGAAGAGCCCAAGAATTACTTCTGGAAAAAGTGCTTCTCGAAGCTCTAGGTTAATAGGAGCAGCTACTAAAATTTTGGAACCTGGACTGCAGGCTAGAAGTAGAGCTAAAGGTTCTCTTACATATCCTGCTTCCATGTATCCTCCTAAAACTGGCATTGTGACAAATGGTGCAGGAAATAAGTCAGTAGTTATGCAAAACCAATCTTGTTATGATGCCAGCACAGCCAAGCCTTTGATGGGGCAAACTTCTTGCAAAAATTGTGGTAATTTGCTTGATGTTATTGACTCCAAGCCAGTGGTTGGGGGACAGCCAGCATTTCCTCCACCAATTGTTTCAGATGTGATCACTGCTACTACCTCTATGGTTTCATCACAGAAGATGGGAAAGTCATTAACTCCCTCTCATGGACAAGAAAGAGATATTGTTCTTTTGAGAAGTCAGGAAAAGCTCATATCTCTTGTTACTGAAGAAGAGGGTAAGAATAATGCACAACAGTCATGGAATCAACCTGCTAGTGCTACCAGAAGAATGACAATGCTCCATGAAGGTCCAGCTAAATGGAATTCATCATGCCAACCATTGAGGGGCCTAGAGGACAATGCATCTTCTTTTGCCTTAAAACACAAAACTCAGACACAAGAACAGATGTTAAACAGTGAAAGATATTCATCTGTATCTACAATGAGTAATGTGCAGGTAAAAAGAGTATCATCGTCTGCGAGCACCATGAGTGGGAGTGGGAGTGGGACTAAAGACTTTGTTGCCTTGAATAGAAGCCTAAGTGGTCGAACAAGGATGAGGTCACCTACCAAAATGGATAATTCCAAATTTGACTTAGAGAAAAAACCTTGTAATAGACAGCATAATTCCTTGTCTCATGTAAGGACATTGGAGAGGAAAAGAAGGACCCCAAATGTCACACAACTTGAAGGCACAGCTTCTGTTAATTCAGTTGGTGTGAAACAGAGAAATCTCCATTCCAATGCAGTGGGTGGGAAAAGGAGGGACTTTGACTCTTCCTCCTCAAACAGTTCTAATGTTAAAAGCGAACGAGATGGACAGGGAGAAACAAAGAAGGTTCATGACAATAAGATCAAGGATGTAGTTTCATTCACATTTAATTCCCCCTCGAGGCAAAAGATTGGAATACTTTCTGAGAAGGAAGAGACAAGCAGTGACAATGAGCGGAGGACATACTTCCAAAGACCTTCACCCTTGAAAGTTAATGCTTTAGGTGCCTTTCTAGAACAAAAGTTGAAGGAATTAACCTCTCAAGAAAATGAGGAGCTGGCTACAGGTGCTCTACCTGAAAAATCAAGTACCATGATTCTTCAAGAGCTTATATCTGCTCTAAGTTCAGAGCATTTGATCTGTCATGGTGGTAATATGTTTAATGAAAACTATGGTTTCCATTGTGGGGCAAAACAAGAATGTTTATTAGGAACCTCTTTCAATGGTAATCATCTCAGTCCTGGATCTGTTTTGGAAGCTTCCTTTTCTTCCAGTAGTCTGGATGAAAGCTCAGGGAATGTTTTTCACCCTGACTCCATGAATTACTCACATGGTCCACTGGAACAATTGGAACATGATACTGAACTTGTAGATTCTGCAACATCTTTTAACAAAGGAAGGATAGTTGAGATCATGACTGATCTTGTCAACCAAATTCCTAGAGCATTACAATGTCTATATTCTTTTGGGACACAATTGACAAGAAGCAAGCTCAATAATATGAATGATGTTCTCTTGAATGCTGAATTGGTGCTTGGAATTGCAACTGACCACAATGAGGATGAAGTGCCACAGCTTTTAATTTATCAGTTTCTCCTTCATGAATTGGACACTATGGCAGGTGATGCTATGTGGACAGATTTTAATGGCTTTATGGGTTGTGAGGATTCTAAACAGAGAGAGAAACTCAAAGGATTTGTCTTTGATTGTGTTATGGAATATCTAGAATCAAATTGTTGCCAATATTTTTACTCTGGATTCAAGGCATGGATTAAGCTCCCATTATGCATAAAAGCTGAGATGTTGGCTCAAGAGGTTAAGAGGGAGATCAAGAACTGGGCAGGTATGGTTGGGATGGTACCTGACAGAATAATAGAATGGGAGATGAGCCACTCCCTGGGGAAATGGACTGACTTTGATATTGAAGCATTTGAAGCTGGTGTTGATATAGATGGGGACATACTTCAAATTTTGGTTGATGAAATTGTTGAAGATCTTGGAGGTTGCAAGCAGAGCTCTATTTCCTTCTAA 2883 0.4055 MNDSTVKSLAIADKKVQKPGGCVGIFFQLIDWKRRLSKKKLFSKKLLPPARAKKFRGDEKMPSSKLHLIANENSGGFPSARKSGNHGVIVDQKSEMRVPSLVARLMGLESIPSAQRDKSKKASYSHGCGDGKKESLANHCELDRQGVDLEVGVVKYDSRPQKLQKTGACERKAVTRFGAEALHIRSVLSRAKKYNHQHHHPKLASPLKSPRITSGKSASRSSRLIGAATKILEPGLQARSRAKGSLTYPASMYPPKTGIVTNGAGNKSVVMQNQSCYDASTAKPLMGQTSCKNCGNLLDVIDSKPVVGGQPAFPPPIVSDVITATTSMVSSQKMGKSLTPSHGQERDIVLLRSQEKLISLVTEEEGKNNAQQSWNQPASATRRMTMLHEGPAKWNSSCQPLRGLEDNASSFALKHKTQTQEQMLNSERYSSVSTMSNVQVKRVSSSASTMSGSGSGTKDFVALNRSLSGRTRMRSPTKMDNSKFDLEKKPCNRQHNSLSHVRTLERKRRTPNVTQLEGTASVNSVGVKQRNLHSNAVGGKRRDFDSSSSNSSNVKSERDGQGETKKVHDNKIKDVVSFTFNSPSRQKIGILSEKEETSSDNERRTYFQRPSPLKVNALGAFLEQKLKELTSQENEELATGALPEKSSTMILQELISALSSEHLICHGGNMFNENYGFHCGAKQECLLGTSFNGNHLSPGSVLEASFSSSSLDESSGNVFHPDSMNYSHGPLEQLEHDTELVDSATSFNKGRIVEIMTDLVNQIPRALQCLYSFGTQLTRSKLNNMNDVLLNAELVLGIATDHNEDEVPQLLIYQFLLHELDTMAGDAMWTDFNGFMGCEDSKQREKLKGFVFDCVMEYLESNCCQYFYSGFKAWIKLPLCIKAEMLAQEVKREIKNWAGMVGMVPDRIIEWEMSHSLGKWTDFDIEAFEAGVDIDGDILQILVDEIVEDLGGCKQSSISF. 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00091 960 Pfam Domain of unknown function (DUF4378) 786 945 IPR025486 -
Seca1g00091 960 MobiDBLite consensus disorder prediction 513 531 - -
Seca1g00091 960 Pfam DUF761-associated sequence motif 91 117 IPR032795 -
Seca1g00091 960 MobiDBLite consensus disorder prediction 194 220 - -
Seca1g00091 960 MobiDBLite consensus disorder prediction 465 569 - -
Seca1g00091 960 MobiDBLite consensus disorder prediction 476 512 - -
Seca1g00091 960 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 8 949 - -
Seca1g00091 960 MobiDBLite consensus disorder prediction 541 557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00091 Seca-Chr1 1396895 1402303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00091 1 950 TRM (TON1 Recruiting Motif) Superfamily AT1G67040 31.865 9.88e-90 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00091 - - aprc:113861902 1407.89