Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00085 ATGAATTATGTTATGTCATGGAACAGATTGATCAAAATGTACACCTCAAGGAAGAAAATCCACAAGGATAAGGAAGTTGAGCCCACTGAATTTGAGGAGACAGTTGCACAGTACCTATTTGATTTGGAGAACACAAATCAGGAACTGAAAAGTGACTTAAAAGATCTCTACATAAACCAAGCAATTCAAATAGATGTGTCTGGGAATCGCAAGGCTGTAGTCATCTATGTGCCTTACAGATTGAGTAACGCATTCCGCAAAATCCATCTTCGCCTTGTCAGAGAGTTGGAGAAGAAGTTCAGTGGGAAGGATGTTGTATTGATTGCCACAAGAAGGATCCTGCGGCCTCCAAAGAAAGGGTCTGCTGTTCAGCGACCTCGAACCCGCACTTTAACTGCCGTCCATGATGCTATGCTGGAGGATGTTGTGTATCCTGCAGAGATTGTTGGTAAAAGAGTCAGATATAGAATTGATGGATCAAAAATAATCAAGGTTTTCTTGGACCCCAAGGAACGCAATAATACTGAGTACAAGCTGGAGACTTTCTCTAGAGTTTACAGGAAGCTTACTGGAAAAGATGTAGTTTTCGAGTATCCTATCACAGAAGCCTGA 612 0.4167 MNYVMSWNRLIKMYTSRKKIHKDKEVEPTEFEETVAQYLFDLENTNQELKSDLKDLYINQAIQIDVSGNRKAVVIYVPYRLSNAFRKIHLRLVRELEKKFSGKDVVLIATRRILRPPKKGSAVQRPRTRTLTAVHDAMLEDVVYPAEIVGKRVRYRIDGSKIIKVFLDPKERNNTEYKLETFSRVYRKLTGKDVVFEYPITEA. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00085 203 Pfam Ribosomal protein S7e 19 198 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca1g00085 203 PANTHER 40S RIBOSOMAL PROTEIN S7 13 202 IPR000554 GO:0003735|GO:0005840|GO:0006412
Seca1g00085 203 Coils Coil 39 59 - -
Seca1g00085 203 ProSitePatterns Ribosomal protein S7e signature. 91 104 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00085 Seca-Chr1 1285575 1287588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00085 13 203 Cytoplasmic Ribosomal Protein Gene Family AT3G02560 80.628 3.12e-115 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00085 K02993 - gmx:100500684 356.295