Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00072 ATGCGGATGAGCTGTAACGGATGCCGGGTACTCAGAAAAGGTTGCAGTGAGAATTGCAGCATAAGACCCTGTTTACAGTGGATCAAGAGCCCAGAATCCCAAGCCAATGCCACTGTCTTTCTTGCTAAGTTCTATGGCCGTGCTGGCCTCATGAACCTTGTCAACGCCGGCCCCGAGCATCTCCGTCCAGCGATTTTTCGTTCATTGCTGTACGAAGCATGCGGTCGGATAGTGAACCCGATTTACGGTTCGGTCGGTTTGTTGTGGTCGGGGAGCTGGCAGCTTTGTCAAGCCGCCGTCGAAGCCGTTTTGAAAGGCGCGCCAATCACGCCGATCACATCTGAAGCCGCGGCTAATGGGCGGGGCCCACCACTCAAGGCATACGACATACGCCACGTGTCCAAGGACGAGAACTCCGCTGCCGCGTCAAATGAAACTCACCAACGAGTCAAGACTCGGTCCCGTGTCAAGCGAACCGTCGCTGGCAAGCCAAAAGTAACCGCCAACGAGGAAAAAACTAAAACCAATAAGGGAACGGAATTGGGTTCGGCTGGACCGGATTCCGTACGGGATGCTGGAGTGGTTGCATGGACCGGGTGTTGCGCGACCGAAGAGGTGTTGAACCGGTCTGGGAGTCATGATCACGAGTCCTCGCTTAGCCACCAGTCAGAGGCGGCGAATGCGGTGGAGGGAGAGAGCAAAGAGAGCGAGAGCATGGTTTCGGTGGAGACCGCGGAGACTTCGATTCTCTTCCGTGATGAACCGGAGTCGAACCCAAAGCGAAGTGACCGAACCGATAAGAGTGGTGGGTATCATGTTGGTCTAGAGCTGACGCTTGGGCTTGAACCGCTCTCACGTGCGGATCACGTGGTTCCGGTTAAGAAGAGAAGGGTTGAATTGTTGAAGGATTGTGGTGGTTCGGCTGACAATGGCTCATGCAAGATGGATCTGGGGCTTGCTTGA 963 0.5514 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPITSEAAANGRGPPLKAYDIRHVSKDENSAAASNETHQRVKTRSRVKRTVAGKPKVTANEEKTKTNKGTELGSAGPDSVRDAGVVAWTGCCATEEVLNRSGSHDHESSLSHQSEAANAVEGESKESESMVSVETAETSILFRDEPESNPKRSDRTDKSGGYHVGLELTLGLEPLSRADHVVPVKKRRVELLKDCGGSADNGSCKMDLGLA. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00072 320 MobiDBLite consensus disorder prediction 136 189 - -
Seca1g00072 320 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Seca1g00072 320 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 279 - -
Seca1g00072 320 PIRSF AS2 1 319 IPR017414 -
Seca1g00072 320 MobiDBLite consensus disorder prediction 249 270 - -
Seca1g00072 320 MobiDBLite consensus disorder prediction 209 271 - -
Seca1g00072 320 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00072 Seca-Chr1 1181671 1183200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00072 1 319 AS2 family AT3G02550 54.969 1.84e-108 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca1g00072 LOB 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00072 - - lja:Lj1g3v3317390.1 466.848