Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00071 ATGAATGAAATGAAAAGATCCCCATCAAATCCCCACTATATATATAGCCATAGGTTTGAGTCACACATCAAAATTCATTCCCATTCCATATCACTCTCTTCACTCTTACACACTTCACTTCACTTCTCAACTCAAATTCTATCTATTACCACAAAACCAATCAAATCCAATAATCTTTCCATGGCTATGGTGGTCCTCACAATCCTTTTGGCCATACTCTTGGCTCTGCTATTTAAACTTGTCTATGAAAACCTCTCATGTTACTTTCTCACTCCACTACGCATCAAGAGAATCATGGAGATGCAAGATGTTCGTGGTCCTAAACCTCGCTTCTTCACTGGCAATATCTTAGACATGGCTTCTCTTGTTTCCAAAACAACCTCTCAAGACATGAAAACCATAAGCCATGACATTGTTGGCCGTCTTCTACCACATTTTCTTCTCTGGTCCACCCAATTTGGAAAGAGATTCCTATATTGGAATGGAATAGAACCAAGATTGTGCCTCACAGAGACAGAATTGATCAGAGAGTTTCTTTCAAAACACAGTACAGTATCTGGGAAATCATGGCAACAAAGGCAAGGTTCAAAACATTTCATTGGGGAAGGACTTTTGATGGCAAATGGTGAAGAATGGTACCACCAACGTCACATCGTTGCCCCTGCATTCATGGGAGACAAACTTAAGGTATATATACAGAGCTATGCTGGGCATATGGTGGAATGCACTAAGGAGATGCTCCAATCACTACAAAATGCTTGTGCTTGTGGCCAAAGTGAAGTGGAGATTAGCCACTACATGACTGAACTCACTGCAGATATTATCTCTAGAACTGAGTTTGGTACAAGTTATCAAAAAGGAAAGAAAATATTCCATCTTCTCACACTGCTGCAGACTCGTTGTGCTCAAGCAAGTCGTCATCTTTGCTTTCCTGGAAGCAGGTTTTTACCAAGCAAGTATAACAGAGAGATAAAGGGTTTAAAGATGGAGGTGGAGACTTTGTTGATGGAGATAATACAAAGCAGGAAAGACTGTGTGGAGATTGGTAGAAGCAATTCTTATGGTAATGATTTGTTGGGTATACTCTTGAATGAGATGGAGAAGAAGGAGGAGAAAGGGGATGGGAATAGCTTAAATATGCAGCTGGTTATGGATGAATGCAAAACATTTTTCTTTGCTGGACATGAAACCACTGCTCTTTTACTCACTTGGACTGTTATGTTATTAGCAAGCAATCCATCTTGGCAAGACAGAGTCAGAGATGAGGTTAAAAGAGTCTGCAATGGCAAAACTCCCTCAGTGGATCAACTCTCCAAACTCACTCTTTTGCATATGGTAATCAATGAGTCAATGAGGCTATATCCTCCAGCATCTGTGCTCCCTAGAATGGCCTTTGAAGACATGGTGTTGGGTGACCTTTATATCCCTAAAGGGTTATCAATTTGGATTCCAGTGTTGGCTATTCATCATAGTGAAAAACTATGGGGTAAAGATGCAAATGAGTTCAACCCAGAGAGGTTTACTTCAAAATCTTTCATTCCGGGCCGTTTTTTACCATTTGCTTCTGGGCCTAGAAATTGTGTTGGACAAGCATTTGCCTTAATGGAAGCTAAGATTATATTAGCCATGTTGATCTCAAAGTTTAGCTTCACAATTTCTGAGAATTACCGTCATGCACCTGTGGTTGTCCTCACAATTAAGCCCAAATATGGGGTTCAAGTTTGTTTGAAGCCCTTGGAGCCATGA 1746 0.4049 MNEMKRSPSNPHYIYSHRFESHIKIHSHSISLSSLLHTSLHFSTQILSITTKPIKSNNLSMAMVVLTILLAILLALLFKLVYENLSCYFLTPLRIKRIMEMQDVRGPKPRFFTGNILDMASLVSKTTSQDMKTISHDIVGRLLPHFLLWSTQFGKRFLYWNGIEPRLCLTETELIREFLSKHSTVSGKSWQQRQGSKHFIGEGLLMANGEEWYHQRHIVAPAFMGDKLKVYIQSYAGHMVECTKEMLQSLQNACACGQSEVEISHYMTELTADIISRTEFGTSYQKGKKIFHLLTLLQTRCAQASRHLCFPGSRFLPSKYNREIKGLKMEVETLLMEIIQSRKDCVEIGRSNSYGNDLLGILLNEMEKKEEKGDGNSLNMQLVMDECKTFFFAGHETTALLLTWTVMLLASNPSWQDRVRDEVKRVCNGKTPSVDQLSKLTLLHMVINESMRLYPPASVLPRMAFEDMVLGDLYIPKGLSIWIPVLAIHHSEKLWGKDANEFNPERFTSKSFIPGRFLPFASGPRNCVGQAFALMEAKIILAMLISKFSFTISENYRHAPVVVLTIKPKYGVQVCLKPLEP. 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00071 581 PRINTS E-class P450 group I signature 485 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS E-class P450 group I signature 402 428 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS E-class P450 group I signature 527 550 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS E-class P450 group I signature 517 527 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS E-class P450 group I signature 150 169 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS E-class P450 group I signature 270 288 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS E-class P450 group I signature 382 399 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 Gene3D Cytochrome P450 93 577 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 SUPERFAMILY Cytochrome P450 106 578 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 Pfam Cytochrome P450 151 554 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PANTHER CYTOCHROME P450 FAMILY MEMBER 89 571 - -
Seca1g00071 581 PRINTS P450 superfamily signature 527 538 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS P450 superfamily signature 445 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS P450 superfamily signature 518 527 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00071 581 PRINTS P450 superfamily signature 393 410 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00071 Seca-Chr1 1120278 1124711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00071 61 441 Cytochrome P450 AT5G38450 62.924 2.64e-160 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00071 K10717 - gmx:100808392 925.235