LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00069	ATGAAGGTTAACGTGAAGACACTCAAGGGGACTCACTTTGAGATCGAAGTGAACCCACAAGACATGGTTACTGATGTGAAGAAAAATATAGAAGTAGCGCAAGGTGCTGATGTTTACCCTGCTGCACAACAAATGCTTATTTATCAAGGGAAAGTGCTAAAGGATGCTACAACCCTGGAAGAAAACAAAGTTGCTGAGAATAGTTTTATGGTGATCATGTTATCCAAGAATAAGGCATCATCAAGTGGAGCCCCGGCTGCTTCATCTGCACCCCCAAACCCGGCGGCTCAACCTGCAAGTTCTTTGCCTCTCACTTCATCAACATCTCAACCTCCTTCTTCGACTGTAGGACAGGGAGAATCCAATTCTGAGCATAATCCTGTTACAACTCCTTCTGCTACGGTGCCTAGCAGCATATATGGCCAAGCAGCATCAAATCTTATCGCTGGTAGTAATTTGGAATCAACTATTCAGCAGATTCTAGAAATGGGGGGAGGAAGTTGGGATAGGGATACTGTTATCCGTGCTCTTCGTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTCTATTCTGGCATTCCTGAACAAGCTGATGTACCGGCAGTTGCCAGATCCGCCACAATTGGGCAGGCAGAAAACCCTTCAGTCCAGGCTCCACAACCAGCTGTGCCTACTGGCAGTAAACTTTTAACAACTTTGGGTGGTAAAAATATAATGCCTGTAATTTTGTTTTTGAACCAGGGCATTCCCAATTTGGGTACAAATGAAAATGCAGGTGACTTGGATTTCCTGCGAAACAGTCAACAGTTCCAAGCCTTGAGAGCGATGGTGCAAGCAAACCCTCAAATTTTGCAGCCTATGCTTCAGGAACTGGGAAAACAAAATCCTCACCTAATGCAGCTCATCCAAGAGCATCAAGCTGACTTCTTACGTCTTATAAATGAACCTGAAGGAGAAGGAGAGGGGAACCTACAGAATCAGTTGGCTTCTTTGATGCCTCCGACCATCACTGTCACCCCTGAAGAGCAGGAGGCCATTCAACGGCTTGAAGATATGGGATTTGATCGAGATCTGGTGTTGGAGGTGTTCTTTGCCTGCAATAAAAACGAGGATCTGGCAGCCAACTATCTATTGGATCACCAAAATGACTTTGACGACTAG	1167	0.4507	MKVNVKTLKGTHFEIEVNPQDMVTDVKKNIEVAQGADVYPAAQQMLIYQGKVLKDATTLEENKVAENSFMVIMLSKNKASSSGAPAASSAPPNPAAQPASSLPLTSSTSQPPSSTVGQGESNSEHNPVTTPSATVPSSIYGQAASNLIAGSNLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQADVPAVARSATIGQAENPSVQAPQPAVPTGSKLLTTLGGKNIMPVILFLNQGIPNLGTNENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGEGEGNLQNQLASLMPPTITVTPEEQEAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNDFDD.	389

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00069	388	Pfam	UBA/TS-N domain	153	191	IPR015940	-
	Seca1g00069	388	Pfam	UBA/TS-N domain	343	379	IPR015940	-
	Seca1g00069	388	Gene3D	-	336	384	-	-
	Seca1g00069	388	ProSiteProfiles	Ubiquitin domain profile.	1	79	IPR000626	GO:0005515
	Seca1g00069	388	Gene3D	-	146	196	-	-
	Seca1g00069	388	FunFam	UV excision repair protein RAD23	1	80	-	-
	Seca1g00069	388	CDD	UBA1_Rad23_plant	147	196	-	-
	Seca1g00069	388	NCBIfam	UV excision repair protein Rad23	1	387	IPR004806	GO:0006289
	Seca1g00069	388	FunFam	UV excision repair protein RAD23 B	254	319	-	-
	Seca1g00069	388	Pfam	XPC-binding domain	263	318	IPR015360	GO:0003684\|GO:0006289\|GO:0043161

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00069	Seca-Chr1	1081261	1087465	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00069	1	74	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	35.135	9.06e-07	46.2

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00069	K10839		-	zju:107416575	501.901

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