Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00069 ATGAAGGTTAACGTGAAGACACTCAAGGGGACTCACTTTGAGATCGAAGTGAACCCACAAGACATGGTTACTGATGTGAAGAAAAATATAGAAGTAGCGCAAGGTGCTGATGTTTACCCTGCTGCACAACAAATGCTTATTTATCAAGGGAAAGTGCTAAAGGATGCTACAACCCTGGAAGAAAACAAAGTTGCTGAGAATAGTTTTATGGTGATCATGTTATCCAAGAATAAGGCATCATCAAGTGGAGCCCCGGCTGCTTCATCTGCACCCCCAAACCCGGCGGCTCAACCTGCAAGTTCTTTGCCTCTCACTTCATCAACATCTCAACCTCCTTCTTCGACTGTAGGACAGGGAGAATCCAATTCTGAGCATAATCCTGTTACAACTCCTTCTGCTACGGTGCCTAGCAGCATATATGGCCAAGCAGCATCAAATCTTATCGCTGGTAGTAATTTGGAATCAACTATTCAGCAGATTCTAGAAATGGGGGGAGGAAGTTGGGATAGGGATACTGTTATCCGTGCTCTTCGTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTCTATTCTGGCATTCCTGAACAAGCTGATGTACCGGCAGTTGCCAGATCCGCCACAATTGGGCAGGCAGAAAACCCTTCAGTCCAGGCTCCACAACCAGCTGTGCCTACTGGCAGTAAACTTTTAACAACTTTGGGTGGTAAAAATATAATGCCTGTAATTTTGTTTTTGAACCAGGGCATTCCCAATTTGGGTACAAATGAAAATGCAGGTGACTTGGATTTCCTGCGAAACAGTCAACAGTTCCAAGCCTTGAGAGCGATGGTGCAAGCAAACCCTCAAATTTTGCAGCCTATGCTTCAGGAACTGGGAAAACAAAATCCTCACCTAATGCAGCTCATCCAAGAGCATCAAGCTGACTTCTTACGTCTTATAAATGAACCTGAAGGAGAAGGAGAGGGGAACCTACAGAATCAGTTGGCTTCTTTGATGCCTCCGACCATCACTGTCACCCCTGAAGAGCAGGAGGCCATTCAACGGCTTGAAGATATGGGATTTGATCGAGATCTGGTGTTGGAGGTGTTCTTTGCCTGCAATAAAAACGAGGATCTGGCAGCCAACTATCTATTGGATCACCAAAATGACTTTGACGACTAG 1167 0.4507 MKVNVKTLKGTHFEIEVNPQDMVTDVKKNIEVAQGADVYPAAQQMLIYQGKVLKDATTLEENKVAENSFMVIMLSKNKASSSGAPAASSAPPNPAAQPASSLPLTSSTSQPPSSTVGQGESNSEHNPVTTPSATVPSSIYGQAASNLIAGSNLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQADVPAVARSATIGQAENPSVQAPQPAVPTGSKLLTTLGGKNIMPVILFLNQGIPNLGTNENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGEGEGNLQNQLASLMPPTITVTPEEQEAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNDFDD. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00069 388 Pfam UBA/TS-N domain 153 191 IPR015940 -
Seca1g00069 388 Pfam UBA/TS-N domain 343 379 IPR015940 -
Seca1g00069 388 Gene3D - 336 384 - -
Seca1g00069 388 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Seca1g00069 388 Gene3D - 146 196 - -
Seca1g00069 388 FunFam UV excision repair protein RAD23 1 80 - -
Seca1g00069 388 CDD UBA1_Rad23_plant 147 196 - -
Seca1g00069 388 NCBIfam UV excision repair protein Rad23 1 387 IPR004806 GO:0006289
Seca1g00069 388 FunFam UV excision repair protein RAD23 B 254 319 - -
Seca1g00069 388 Pfam XPC-binding domain 263 318 IPR015360 GO:0003684|GO:0006289|GO:0043161
Seca1g00069 388 SUPERFAMILY UBA-like 328 386 IPR009060 GO:0005515
Seca1g00069 388 PRINTS DNA repair protein Rad23 signature 289 311 IPR004806 GO:0006289
Seca1g00069 388 PRINTS DNA repair protein Rad23 signature 370 385 IPR004806 GO:0006289
Seca1g00069 388 PRINTS DNA repair protein Rad23 signature 355 369 IPR004806 GO:0006289
Seca1g00069 388 PRINTS DNA repair protein Rad23 signature 338 354 IPR004806 GO:0006289
Seca1g00069 388 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 151 194 IPR015940 -
Seca1g00069 388 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Seca1g00069 388 Gene3D - 1 80 - -
Seca1g00069 388 Gene3D - 255 319 IPR036353 GO:0003684|GO:0006289|GO:0043161
Seca1g00069 388 CDD Ubl_Rad23 1 74 - -
Seca1g00069 388 SUPERFAMILY XPC-binding domain 260 325 IPR036353 GO:0003684|GO:0006289|GO:0043161
Seca1g00069 388 SMART uba_6 153 193 IPR015940 -
Seca1g00069 388 SMART uba_6 344 381 IPR015940 -
Seca1g00069 388 FunFam UV excision repair protein RAD23 homolog 146 196 - -
Seca1g00069 388 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 377 - -
Seca1g00069 388 SUPERFAMILY UBA-like 150 201 IPR009060 GO:0005515
Seca1g00069 388 MobiDBLite consensus disorder prediction 80 136 - -
Seca1g00069 388 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 342 382 IPR015940 -
Seca1g00069 388 SMART CBM 261 304 IPR006636 -
Seca1g00069 388 SMART ubq_7 1 75 IPR000626 GO:0005515
Seca1g00069 388 FunFam UV excision repair protein RAD23 homolog 336 383 - -
Seca1g00069 388 SUPERFAMILY Ubiquitin-like 1 91 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00069 Seca-Chr1 1081261 1087465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00069 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.135 9.06e-07 46.2