Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00054 ATGCTCAATCGACAAGTGGTTAAATCAGAATCTGCTACCATTAAGGTGGAAGGGATACTGATGCGGGCTGCTGATGAACTTCAGGCCCTTCAAGAAGAACGCAGAAAAGTGGCTCCAGAGACTGCTGAAGCAATTGATCAGTTCTTGGTCAAATTGCGAGCCTGTGCAACAGGGGAATCGTCCTTCATGTTTATTCTTGATGATCCCGCAGGAAACAGCTTCATTGAAAACCCGTTCACACCGTCTTCTGATCCATCCTTGACTATCAAGTTTTATGAGCGAACTCCTGAGCAACAAGCATCATTGGGATATCTTGTTGATTCTACACAAATTGAAGGAACTCGTGATGAAGCACCGGAAGGGGGAGAAGCTGTGGCTGCTAATCAAATGAGCGGAGAACCACATGGGTCAGTAGGGGCAGCAGCTGGACATCGAGCCATTGCACAGAGTAATAGTGCAGAAATTGCAGAAGCCTTGTTTCGATATACTGCACCAGAAGAGGTGATGACTTTCCCATCAACTTGTGGTGCTTGTGCCAGTCCGTGTGAAACTCGAATGTTCGTCACCAATATTCCATACTTCCAAGAAGTAATCGTTATGGCATCCACTTGTGATGCTTGTGGTTACCGTAACTCTGAGTTGAAACCTGATGGACGAATTCCTGTAAAAGGAAAAAGGATTACTCTAAGTGTGAAAAATGTTAATGACCCGAGTCGTGATGTAATAAAGTCTGATACTGTGAGTGTAAAAGTTCCTGAACTTGACTTGGAGCTGGCAAGCGGTACCCTGGGAGGAATTGTTACAACTGTTGAAGGTTTAATTACAAAAATTAGTGAAAGCCTTGAGAGGGTCCATGGGTTTACTTTCGGAGATAGTCTTGATGAACATAGAAGAAGCAAGTGGCTAGACTTCAAAGCAAGGCTAAAGAAGCTTCTTAGCATGGAAGAAGCTTGGACTCTAACTCTTGATGATGCATTAGCCAATTCTTTTGTAGCACCTGCAACTGATGATCTCAAAGACGACAATCAATTAACATTTGAGAAATATGAGAGGTCATGGGAGCAAAATGAAGAATTAGGTCTGAATGATATGGATACCTCTTGTGCCGATGCTGCTTATGAATCAACAAATACTACTAAAATTGAGTGA 1149 0.4299 MLNRQVVKSESATIKVEGILMRAADELQALQEERRKVAPETAEAIDQFLVKLRACATGESSFMFILDDPAGNSFIENPFTPSSDPSLTIKFYERTPEQQASLGYLVDSTQIEGTRDEAPEGGEAVAANQMSGEPHGSVGAAAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACASPCETRMFVTNIPYFQEVIVMASTCDACGYRNSELKPDGRIPVKGKRITLSVKNVNDPSRDVIKSDTVSVKVPELDLELASGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDEHRRSKWLDFKARLKKLLSMEEAWTLTLDDALANSFVAPATDDLKDDNQLTFEKYERSWEQNEELGLNDMDTSCADAAYESTNTTKIE. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00054 382 FunFam Zinc finger protein ZPR1 219 361 - -
Seca1g00054 382 SMART zpr1 173 333 IPR004457 GO:0008270
Seca1g00054 382 FunFam Zinc finger protein ZPR1 164 218 - -
Seca1g00054 382 Gene3D ZPR1, zinc finger domain 163 218 IPR042452 -
Seca1g00054 382 NCBIfam ZPR1 zinc finger domain 174 365 IPR004457 GO:0008270
Seca1g00054 382 Gene3D ZPR1, A/B domain 219 361 IPR042451 -
Seca1g00054 382 Gene3D ZPR1, A/B domain 15 104 IPR042451 -
Seca1g00054 382 Pfam ZPR1 zinc-finger domain 16 76 IPR004457 GO:0008270
Seca1g00054 382 Pfam ZPR1 zinc-finger domain 173 331 IPR004457 GO:0008270
Seca1g00054 382 PANTHER ZINC FINGER PROTEIN ZPR1 1 376 IPR040141 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00054 Seca-Chr1 943923 953482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00054 1 381 C2H2 Transcription Factor Family AT5G22480 70.250 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00054 K06874 - gmx:100798741 670.233