Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00032 ATGCCGGAGCTTCGTAGTGGACGCCAGCGTCGTCGTGGTGCTCCGGTAGGCCGTAGAAGCTCAGAACCACCGTCTCGGGCGGCAAAATACGTGAAAACTCGGGCTGCAGTGGCTGCAGCTAAGAAACTTGAGGAGGAGAAGGCGGTGATCGTAATTTCAGAGCGTGATAGCGATATAAATAAGGAGAAGGAAGACTTGATGGGTGATGAAAGTGGCGGTTTGAGTGCTAACAAGGGCCTTCCTCAAGAGGATGAGGGCAACACTGCCCCTTTTCCCGAGAGGGTTCAAGTAGGAGGATCACCTGTGTACAAAGTGGAGAGGAAACTGGGTAAAGGTGGGTTTGGACAGGTTTTTGTTGGCCGTCGAGTTACTGGTGGTAATGACCGTATTGCTGGCCCTGGTGCCACTGAGGTGGCTTTGAAATTTGAACATAGAAATAGTAAAGGCTGTAACTATGGCCCTCCTTATGAATGGCAAGTGTACAACACCCTTGGTGGTAGTCATGGAATACCTAAAGTACATTATAAAGGAAGACAGGGAGAATATTACGTAATGGTTATGGACATGCTTGGTCCAAGCTTGTGGGATGTATGGAATTCCTCAAGCCAGGCGATGTCTGCAGAAATGGTCGCATGTATTGCTGTTGAGTCATTGTCAATTCTGGAGAAGATGCACTCAAGAGGATATGTGCATGGCGATGTAAAACCAGAAAACTTTTTACTAGGCCAGCCAGGTACAGCACAAGAGAAGAAATTGTTCCTTGTTGACCTTGGATTAGCAACAAAATGGAGAGACACATCCAGTGGACAGCATGTGGAATATGATCAACGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGTGTTCATGCTCACTTGGGAAGAACTGCTAGTCGAAGGGATGATCTTGAATCTCTTGCATATACACTTATTTTCCTTCATAAAGGCCGGTTACCATGGCAAGGTTATCAGGGTGATAACAAATCCTTCCTTGTTTGCAAAAAGAAGATGGGAACATCTCCTGAGATGTTATGCTGCTTCTGCCCTCCTCCTTTTAGGCAGTTTCTTGAGGTTGTAGTTAATATGAAATTTGATGAAGAACCTAACTATTCCAAGCTAATATCTCTGTTTGATGGTATGCTTGGACCAAATCCTGCATTGCGACCAATTAACACCGAAGGTGCTCAAAAGGTTGGGCAAAAGAGGAGCAGATTGAATACTGAGGAAGAGGATGATTCACAGCCCAAAAAGAAGGTTCGTTTGGGGGTTCCTGCTACACAATGGATTTCAGTTTACAATGCAAGACTGCCAATGAAGCAAAGGTATCATTACAACGTAGCGGATGCAAGATTAGCACAGCATGTGGAGAGAGGGGTTGCAGATGGTCTTCTTATTAGTTGTGTAGCTTCTTGTTCCAATCTGTGGGCACTTATTATGGATGCTGGAACTGGTTTTACAAATCAAGTTTACAAGTTGTCTCCTTTCTTCTTACACAAGGAATGGATCATGGAGCAGTGGGAGAAGAACTATTACATTACTTCTATAGCTGGGGCTAATAATGGGAGCTCTCTTGTAGTGATGTCAAAAGGCACCCAGTATACACAACAATCATACAAAGTAAGTGATTCTTTCCCCTTCAAATGGATAAACAAGAAGTGGAGAGAAGGTTTTCATGTGACTTCAATGGCCACTGCTGGAAGTCGCTGGGGCGTTGTTATGTCTCGGAATGCTGGATTCAGTGATCAGGTCGTTGAACTTGATTTTCTCTACCCTAGTGAAGGCATCCACAGACGTTGGGATAGTGGTTACAGGATTACAGCAACTGCTGCTACATGGGATCAATCTGCTCTTATTTTAAGCATTCCAAGGCGCAGGCCTGGCGATGAAACTCAGGAAACTCTGCGTACATCTCAATTTCCAAGCACACATGTTAAGGTCCAATATCAACTCCAAGTAAAAATTCACAACATCAACCGCAATCAATCTGAGGAAAGTAATGCTGCAAAATTGAGCTCTAGTGGTGGAGAGGATATGCTTCTCTCTGTATGCTGTTGCCATGGACGGTATTTAAAAACTTAA 2082 0.4452 MPELRSGRQRRRGAPVGRRSSEPPSRAAKYVKTRAAVAAAKKLEEEKAVIVISERDSDINKEKEDLMGDESGGLSANKGLPQEDEGNTAPFPERVQVGGSPVYKVERKLGKGGFGQVFVGRRVTGGNDRIAGPGATEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEYYVMVMDMLGPSLWDVWNSSSQAMSAEMVACIAVESLSILEKMHSRGYVHGDVKPENFLLGQPGTAQEKKLFLVDLGLATKWRDTSSGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLIFLHKGRLPWQGYQGDNKSFLVCKKKMGTSPEMLCCFCPPPFRQFLEVVVNMKFDEEPNYSKLISLFDGMLGPNPALRPINTEGAQKVGQKRSRLNTEEEDDSQPKKKVRLGVPATQWISVYNARLPMKQRYHYNVADARLAQHVERGVADGLLISCVASCSNLWALIMDAGTGFTNQVYKLSPFFLHKEWIMEQWEKNYYITSIAGANNGSSLVVMSKGTQYTQQSYKVSDSFPFKWINKKWREGFHVTSMATAGSRWGVVMSRNAGFSDQVVELDFLYPSEGIHRRWDSGYRITATAATWDQSALILSIPRRRPGDETQETLRTSQFPSTHVKVQYQLQVKIHNINRNQSEESNAAKLSSSGGEDMLLSVCCCHGRYLKT. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00032 693 MobiDBLite consensus disorder prediction 403 417 - -
Seca1g00032 693 MobiDBLite consensus disorder prediction 1 29 - -
Seca1g00032 693 CDD STKc_CK1 103 378 - -
Seca1g00032 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672|GO:0006468
Seca1g00032 693 Pfam Protein kinase domain 103 393 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00032 693 PANTHER CASEIN KINASE-RELATED 103 627 - -
Seca1g00032 693 SMART serkin_6 103 406 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00032 693 MobiDBLite consensus disorder prediction 55 95 - -
Seca1g00032 693 ProSiteProfiles Protein kinase domain profile. 103 388 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00032 693 SUPERFAMILY Protein kinase-like (PK-like) 103 386 IPR011009 -
Seca1g00032 693 FunFam casein kinase 1-like protein HD16 76 421 - -
Seca1g00032 693 ProSitePatterns Protein kinases ATP-binding region signature. 109 141 IPR017441 GO:0005524
Seca1g00032 693 Gene3D Transferase(Phosphotransferase) domain 1 84 425 - -
Seca1g00032 693 MobiDBLite consensus disorder prediction 55 69 - -
Seca1g00032 693 MobiDBLite consensus disorder prediction 389 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00032 Seca-Chr1 598098 605591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00032 221 378 MAP Kinase Kinase Kinase AT5G50180 27.500 5.02e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Seca1g00032 Pkinase 2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00032 - - gmx:100819969 1171.38