Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00030 ATGGCAGCATCAACATCTTGTGTTAGCAACAATCCATCCCCCATGAAAGAGACAGATCCAATCTCTCATTCATATCCTACACCTCTTGCAAGATATGAGGAAGTTGTAGCAAATCCAAAGTTGTTCATGTTCACATTGGAGAAGCTCCATGCTTCCATGGGTACCAAGTTCATGATTCCCATTATTGGAGGAAGAGAATTAGATTTACATCGCCTCTTCATTGAAGTGACTTCTCGTGGAGGGATTGAAAAGCTTATTAGGGAGAGAAGATGGAAAGAAGTAACTGCAGTTTTCAATTTTCCATCAACAGCCACAAATGCTTCCTTTGTGTTGCGGAAGTACTATTCTTCATTGCTTTACCATTATGAACAAATCTATTATTTTAGAGCCAATCAATGGACCCCTGCAACTTCTGGTCTGCATTTAAATGAAATTGCTTGA 441 0.3946 MAASTSCVSNNPSPMKETDPISHSYPTPLARYEEVVANPKLFMFTLEKLHASMGTKFMIPIIGGRELDLHRLFIEVTSRGGIEKLIRERRWKEVTAVFNFPSTATNASFVLRKYYSSLLYHYEQIYYFRANQWTPATSGLHLNEIA. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00030 146 MobiDBLite consensus disorder prediction 1 21 - -
Seca1g00030 146 SMART bright_3 37 128 IPR001606 GO:0003677
Seca1g00030 146 Pfam ARID/BRIGHT DNA binding domain 40 123 IPR001606 GO:0003677
Seca1g00030 146 SUPERFAMILY ARID-like 33 135 IPR036431 GO:0003677
Seca1g00030 146 FunFam High mobility group B protein 15 30 143 - -
Seca1g00030 146 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g00030 146 ProSiteProfiles ARID domain profile. 36 127 IPR001606 GO:0003677
Seca1g00030 146 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 136 - -
Seca1g00030 146 Gene3D - 21 138 IPR036431 GO:0003677
Seca1g00030 146 SMART ARID_2 33 123 - -
Seca1g00030 146 CDD ARID_HMGB9-like 38 123 IPR045303 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00030 Seca-Chr1 566979 568683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00030 3 138 ARID Transcription Factor Family AT1G04880 62.500 2.41e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca1g00030 ARID 2.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00030 - - fve:101295999 225.713