Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00029 ATGCAGAGTCATTCAACCATGTATGTTCCTGCTCAAAGAACGCAGTTTTCGCAGCCTTCCCTAGGAGTTCAACCAGCTATCTTTCAACAGTCAATAGTTAATGTTGCTGAATTGCATGAAGGTTCAGAGATTCTCAAAGGAGTCCTTTATGAAGCTCCACAAATCCCGATATCGTCGGCCTTTGCAACACATCGACAGAGTATTATGGCTAAGAACAACAATGTCTCTATTGCTTTAGGTGTCCATCGTCGACATTGCAGGAAGAAATCAGAAATCAAAAGAAGAGATCCTGCTCATCCAAAACCCAATAGAAGTGGTTATAATTTCTTCTTTGCTGAGCAACATGCTAGACTAAAGTTACTAAATCAGGCAAAAGACAGAGATATTAGTAGGACGATTGGTGAACTTTGGAACAAGTTAAAAGAGCCTGAAAAATCAGTTTATCAAGAAAAGGCTCTTAAGGATAAAGAGAGGTACAAGGCAGAAATGGAGAATTATCGCGAGAAATTGAAGATGTGCCATGTGATCAGCGATCTTGTGCCATTGCAACAACAACTTCCTGAAGTAGATACAACTTTGGTTGATGTGGACATAAAATTGCTTGGTTCTTCTCAAACTCCAGAGGAGAGTAGTTCTGGTGGAAATGACTATGAAGATGATATCAGTATGGATGCATCTCCTGGAGTAAAAATGGGCGTTGAAGCTACCTATATGAGTTCAAACAAGGCATCTGATGAGGGGGATTGCGAGCTTCTTGGTCATTGCGAGAGAGAAAGGGATAATGGAGTTTTACAAGTTCAGAATATGAACGACAGTCAAAATATGCTAGCACTACTTTAA 840 0.4012 MQSHSTMYVPAQRTQFSQPSLGVQPAIFQQSIVNVAELHEGSEILKGVLYEAPQIPISSAFATHRQSIMAKNNNVSIALGVHRRHCRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKLLNQAKDRDISRTIGELWNKLKEPEKSVYQEKALKDKERYKAEMENYREKLKMCHVISDLVPLQQQLPEVDTTLVDVDIKLLGSSQTPEESSSGGNDYEDDISMDASPGVKMGVEATYMSSNKASDEGDCELLGHCERERDNGVLQVQNMNDSQNMLALL. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00029 279 Gene3D High mobility group box domain 85 175 IPR036910 -
Seca1g00029 279 Coils Coil 149 169 - -
Seca1g00029 279 SUPERFAMILY HMG-box 87 171 IPR036910 -
Seca1g00029 279 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 100 167 IPR009071 -
Seca1g00029 279 SMART hmgende2 99 168 IPR009071 -
Seca1g00029 279 MobiDBLite consensus disorder prediction 203 226 - -
Seca1g00029 279 PRINTS High mobility group (HMG1/HMG2) protein signature 151 171 - -
Seca1g00029 279 PRINTS High mobility group (HMG1/HMG2) protein signature 132 151 - -
Seca1g00029 279 Pfam HMG (high mobility group) box 100 167 IPR009071 -
Seca1g00029 279 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 31 199 - -
Seca1g00029 279 CDD HMG-box_AtHMGB9-like 100 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00029 Seca-Chr1 565252 566911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00029 41 200 ARID Transcription Factor Family AT1G04880 58.683 2.06e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Seca1g00029 HMG_box 4e-14 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00029 - - lja:Lj1g3v3329490.2 334.339