LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00027	ATGGCTTCATCTTTGGAGGAGCTTCTTGCAGAGGAAGGGTTCAAAGGCAGAAGAGTATCAAGGTCTAGATCTTCCTTCCACTATGGTGCTTCAAGTGAGCCACTTCACTCTTTGGAAGAGAGACTTTGTGTATCAACTGAAAGAATTAAAACACACAGAACAAAGTCTGATGCCTCAAGACATCAGATTAGAAGTGAACTGTTAAAAAGTGAGACTCATAGGAGGCCAAGAAATGATGTTTTTATAGGAGACAAAACAGATGAACTATTGAAGAATGAGGCTGAGAAGAAATCTTCTAGCAATACAAATTCAGGCAAAGGAATTGACAACAATTCATCAGAATACATGCCAAGGTATGAGGTGAGTGAACAAGAAGGTAGCATAGTTGAAGATGGCTATTCAAACAAAGTGTCTAATGCAAAAAGAGGCAAAGAAAAGTCATTCAAGGATGCAAAGGTGAGTAAGATGCATAGCAGAAGTTCCAGTATACATATGCTTAGACACTCTAGTGAACATGGAAAGAATATGAAACCTGAGGCTGAGGAGGAGTCATACACTAGAGTTAATAACAAAAGCTTTGAAGATAGCAGAAATAAAAATAGTCATCATGCAATGCAAGCAGCTTCTAGTCTTGCTCTTGATGAAGTTGCTGTCCAAGCAGTAGTTTCCATTCTAAATGGATATATAAAACGCTTTCTAAAGGATGAGGATTTTCGGTCTACTTTGCGCCATAATTGTTTCTCCTCCTTGAATTTTATTCAGGTGGATGAAGAAAACAATACTGAGATCAAAGTCATTAGAAGTCTTGAGCAAGCAATTGAAACCATAGAACAACATGCTGAGGAACCTATATCTGCCTCATATCTGAAAAAAGCCATGATGCAACTTAGCATTATTACAGGTTTGAGTTTAAATGATCTCAAGTATGGGTGTACATGTGGGATCCCAAATTATAAGTTATCAGCTTGTGCTCATCTTTACCTCAGTGTGGTATATATGATACAGAGAAAAAATAAAGTTTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCTTTTCAGGCAAGGACAACATTGTTGCCTGAACTGTGGGAGCATCTATTTTCTCAACAATTTTCCCATTTGAAGGCATGGTACAACAAGGAAGCTGAAATTTTAATAGATACACCAAGTAAAACCAAAAAGCTAAAGCTTCTTCAAAAAATGTATAATGAACATTTGGATTCTGGAACTCATATATTTGCTGTGTATTACAAAGATTGGCTTACTGAAGGAGTAGAATCTCCAACTATTCCTTCTATTGGCATTCCATCAATATCTGTTACAGGAAGTCAACAGGGAAGTTCACTTGGTCATTCTTCAGAGTCTGCTAGCTCCACAGATCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTATATGATTCTGTCTTTGGTATCTCTAGTAAACCTGGAAGCTATGAAGCTGAAGATGATAAGGATGAAGATAGCCTAGAAGATTGTGTGAGAGGTTCTTATGGTTCAACTATTGTTAAACAAACATTAATATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATACTGAAGATTTCACTCAAAGTGTACCAGTTGATGCATTCCATCCTCCAAATAAGACAAGCTCTACTCTTGAAGGATCATATTTTGAAAGCATTCCACAGGAATTCATTTGCCCACTCACTGGAAATATCTTTGAGGAACCAGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAAAAGCCATCAAAGCATGGCTTGAAAAGGGAAACAGAACATGCCCAGTAACAGGAAATGCTTTAGAATGTGTAGCCATGCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAAGTCTGAACGCTTTAATCATCTTATGGATTTTGCTTCTCCATCAGTGGAAAATTCAAAGGATCTTAAGTTGAAAAAGAAGGATGAGGCTACTGTTTTCAAGTTAGAGGGTCTTCTGTCCTCTATGAAAGAAGAGGACAAATCAACTTATGCTAAGCACCTGATATCTTTAGGAGTTCTTTCATTTCTTCTTAGGAGGTTTGAAGTGGGGAATATGGAAGAAAAATCATATGTGGTGGCACTCTTGCTAACTTTTATTCATGCAGACTCTGGTTGCATATTTCAGATAGCAAGAAATGTTAACAGAAAATGTCTTCTTGAGCTTCTTCACAGCAAAGAGGTTACCCCAATAACAAATGCAATACTATTCCTTACTGAACTTTTATCTATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAGATGTATTTGATACAATGCATATTCTGCTCGTGTATCTCAAGAATTCTTCTCCACTTGAAAAGCCCTTAACTGCTGTCCTTTTGTTACATTTTGATCTAATGGTTGAGCCTCAAAAGTTTAGTATATACAGGGAGGTGGCTGTGAAAGCCATTGCAGTGGCACTTGATGCCAGCTTAAATGATGAGAAAGCCCGAGAAAAGTGTTGCAGAGCACTTTTAATCATGTGTGGCCATTTTTCTTCTATGGGAAAGATACTGACCAAGACTAGCATCTTGAAACAAGCAGGTTATAATAATGATAACTCAGAATTGAAACCTCCTAGACATGAAGAAGAGGGTCAACAATCAGATATAACCATTTCATCAGAAGATGAAGAAGAAAGGGGTGAAGAGTTGCAAATGAACTTGTTAGAATCGTTGATTGGTGATGGAGAAAGCCCATTTTTGAAGACCATATCAAGATGTTTAGATTCTAGGCACAAAGATTTGGTGAATGCATGTCTAATAACTGTTATATGGTTGACCTCCTCACTTTCTGTGCTATTTAATGCCGGATTGCATCTTCCTGCCTTATTAGCCATCATCTTTCAGTTGAAAGGAATCCTGGAAAATGGAGAACTTGAGCTCAAGATCCTTGCATCTATGTCCTTGCTTAACTTCAGTAAAATATCAGAATGCAGAACAGTTTTGAAGACTATGGCAGAAGATATTGCTCCCCTTCTTTATGAACTTGTTGATGTAACATGGACTGCGAAGCAGCTGCATGCCATTGTGTCTAGGGAGAATCTGTAG	3111	0.379	MASSLEELLAEEGFKGRRVSRSRSSFHYGASSEPLHSLEERLCVSTERIKTHRTKSDASRHQIRSELLKSETHRRPRNDVFIGDKTDELLKNEAEKKSSSNTNSGKGIDNNSSEYMPRYEVSEQEGSIVEDGYSNKVSNAKRGKEKSFKDAKVSKMHSRSSSIHMLRHSSEHGKNMKPEAEEESYTRVNNKSFEDSRNKNSHHAMQAASSLALDEVAVQAVVSILNGYIKRFLKDEDFRSTLRHNCFSSLNFIQVDEENNTEIKVIRSLEQAIETIEQHAEEPISASYLKKAMMQLSIITGLSLNDLKYGCTCGIPNYKLSACAHLYLSVVYMIQRKNKVSAKHLLQVFCDSPFQARTTLLPELWEHLFSQQFSHLKAWYNKEAEILIDTPSKTKKLKLLQKMYNEHLDSGTHIFAVYYKDWLTEGVESPTIPSIGIPSISVTGSQQGSSLGHSSESASSTDPFSPQPMVSKKLYDSVFGISSKPGSYEAEDDKDEDSLEDCVRGSYGSTIVKQTLIYESETVKFTDQDTEDFTQSVPVDAFHPPNKTSSTLEGSYFESIPQEFICPLTGNIFEEPVTLETGQTFERKAIKAWLEKGNRTCPVTGNALECVAMPFTNLILKRLIDNWKSERFNHLMDFASPSVENSKDLKLKKKDEATVFKLEGLLSSMKEEDKSTYAKHLISLGVLSFLLRRFEVGNMEEKSYVVALLLTFIHADSGCIFQIARNVNRKCLLELLHSKEVTPITNAILFLTELLSMKRRKDVTSFISGLAGEDVFDTMHILLVYLKNSSPLEKPLTAVLLLHFDLMVEPQKFSIYREVAVKAIAVALDASLNDEKAREKCCRALLIMCGHFSSMGKILTKTSILKQAGYNNDNSELKPPRHEEEGQQSDITISSEDEEERGEELQMNLLESLIGDGESPFLKTISRCLDSRHKDLVNACLITVIWLTSSLSVLFNAGLHLPALLAIIFQLKGILENGELELKILASMSLLNFSKISECRTVLKTMAEDIAPLLYELVDVTWTAKQLHAIVSRENL.	1037

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	49	95	-	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	164	201	-	-
	Seca1g00027	1036	SUPERFAMILY	ARM repeat	655	1002	IPR016024	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	871	899	-	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	443	468	-	-
	Seca1g00027	1036	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	546	637	IPR013083	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	96	118	-	-
	Seca1g00027	1036	Pfam	U-box domain	560	631	IPR003613	GO:0004842\|GO:0016567
	Seca1g00027	1036	ProSiteProfiles	U-box domain profile.	559	634	IPR003613	GO:0004842\|GO:0016567
	Seca1g00027	1036	PANTHER	OS04G0584500 PROTEIN	548	1034	-	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	443	467	-	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	49	201	-	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	137	157	-	-
	Seca1g00027	1036	SUPERFAMILY	RING/U-box	553	634	-	-
	Seca1g00027	1036	SMART	Ubox_2	563	627	IPR003613	GO:0004842\|GO:0016567
	Seca1g00027	1036	CDD	RING-Ubox_PUB	561	609	IPR045210	-
	Seca1g00027	1036	MobiDBLite	consensus disorder prediction	11	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00027	Seca-Chr1	531246	537438	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00027	560	676	U-box Gene Family	AT5G42340	37.607	8.00e-15	77.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00027	-		-	lja:Lj1g3v3329610.1	1551.95