Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00024 ATGTTGGATCACTTCTCAGTGTCTCCACCTGGAGGATTTCCTGATCATCCACACAGAGGTTTTGAGACCGTCACCTACATGCTAGAGGGAGCCATAACTCACCAAGATTTTGCTGGCCACAAGGGTACAATAAGAACTGGTGATGTTCAGAAGTATTGTGTGATTTCTTTTTTGGTACAGTGGATGACTGCAGGCAGGGGAATAGTTCACTCAGAAATGCCTGGAGAAGCAAACAACAAGGGATTGCAACTATGGATCAATTTATCAGCCAAGGACAAAATGATTGAGCCTAATTATCAAGAACTGCCAAGTGAGAACATACCAGGAGCAGAAAAAGATGGGGTTGAAGTGAGAGTTATAGCAGGAGAAGCAATGGGAGTCCATTCACCTGTCTACACAAGAACTCCTACCATGTTCCTTGATTTCTCTATGATGCCTGGAGCTCAGTGGCATCAGAGTATTCCAGAGAGTTGGAATTCCTTTGTATATGTAATTGAAGGGGAAGGAGTATTTGGGTCTCCAAATTCATCACCAACTATGGCACACCATGTCTTGGTTTTAAGTCTAGGGGATGGCCTTAGTGTGTGGAATAACTCCTCAAAGCCTTTGAGGTTTGTGCTAATTGCAGGACAGCCACTTAATGAGCCAGTGGCTCAGTATGGGCCTTTTGTGATGAATACACAGTCTGAAATTGAGAAAACTATTGAAGACTATCAATATGCCAAGAATGGGTTTGAGATGAGGAAATATTGGAGATCTCAATAG 765 0.4301 MLDHFSVSPPGGFPDHPHRGFETVTYMLEGAITHQDFAGHKGTIRTGDVQKYCVISFLVQWMTAGRGIVHSEMPGEANNKGLQLWINLSAKDKMIEPNYQELPSENIPGAEKDGVEVRVIAGEAMGVHSPVYTRTPTMFLDFSMMPGAQWHQSIPESWNSFVYVIEGEGVFGSPNSSPTMAHHVLVLSLGDGLSVWNNSSKPLRFVLIAGQPLNEPVAQYGPFVMNTQSEIEKTIEDYQYAKNGFEMRKYWRSQ. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00024 254 Pfam Pirin C-terminal cupin domain 139 244 IPR008778 -
Seca1g00024 254 Pfam Pirin 11 86 IPR003829 -
Seca1g00024 254 CDD cupin_pirin_N 1 88 - -
Seca1g00024 254 CDD cupin_pirin_C 136 212 - -
Seca1g00024 254 Gene3D Jelly Rolls 108 213 IPR014710 -
Seca1g00024 254 PIRSF Pirin 1 252 IPR012093 -
Seca1g00024 254 PANTHER PIRIN-RELATED 1 254 IPR012093 -
Seca1g00024 254 Gene3D Jelly Rolls 1 239 IPR014710 -
Seca1g00024 254 SUPERFAMILY RmlC-like cupins 1 252 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00024 Seca-Chr1 514858 516969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00024 1 249 Calmodulin-binding Proteins AT3G59220 63.745 3.73e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00024 K06911 - gmx:100775597 440.654