Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00016 ATGATGTGTCAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCCTTCAATCCTGTGGACAAGCGCACAGCTATTACCTACATTGATAGCAATGGTGACTGGCACAGAAGCAGCAAAGGTGCTCCTAAGCAAGTAATCATTGAGCTTTGTGCCCTCAAGGGGGAGACTTTGAAAAGGGCCCACAATCCATAG 195 0.4821 MMCQARAGITEVHFLPFNPVDKRTAITYIDSNGDWHRSSKGAPKQVIIELCALKGETLKRAHNP. 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00016 64 PANTHER CALCIUM-TRANSPORTING ATPASE 5 52 - -
Seca1g00016 64 Gene3D - 1 63 IPR023299 GO:0000166
Seca1g00016 64 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 5 52 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00016 Seca-Chr1 426868 427190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00016 4 63 Primary Pumps ATPases AT3G42640 81.667 1.05e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00016 K01535 - gmx:102668626 109.383