Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00014 ATGGATAAGATCAATTTTGTGAAGAATGGGGAGCTTAGATTGCCTCCTGGATTCCGTTTCCACCCAACTGATGAGGAGCTTGTTGTTCAATACTTGAAGCGTAAGGCCTTCTCTTGCCCTCTCCCTGCCTCTATCATTCCTGAGGTTGATGTTTGCAAGTTGGATCCTTGGGATTTGCCAGGTTTAGGTGATTTGGAGCAAGAGAGGTACTTTTTCAGCACCAAAGAGGCCAAATATCCTAATGGGAATCGATCCAACAGAGCAACCAATTCAGGTTACTGGAAGGCAACTGGGTTGGACAAACAAATTGTAACTTCCAAAGGGAACCATGTTGTGGGGATGAAGAAGACTCTGGTTTTCTACAGAGGAAAGCCACCTCATGGATCAAGAACTGATTGGATCATGCACGAATATCGCCTCCACAACACTTCCTCTCAGACTCAGGTAAGGATTAGTATTGGATTTAACAATTTAACAAACAATACCTTTGCTTTTAACAATGTTGTGCAGAAGCAGAGCCATATGGAAAATTGGGTTCTATGTCGCATATTTTTGAAGAGGAGAGGCAGTGCTAAAAGTGGGGGTGAAGGCATAGAAAGCATAGATAACATTAGCCACAACAAGGTGAGAAACTCTAGGGTGGTTTTCTATGACTTCTTGGCACAGAACAAGACTTCTTCCTCATCCAGTGGCAGTGGAATCACAGAGCTTTCCACCAATGAATCCGATGAACATGAAGAACAGAGTAGTAGCTCAAATACTAATACCAAGACCCTCCCTTATTTTAGAAGAAAACCTTAA 801 0.427 MDKINFVKNGELRLPPGFRFHPTDEELVVQYLKRKAFSCPLPASIIPEVDVCKLDPWDLPGLGDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNHVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLHNTSSQTQVRISIGFNNLTNNTFAFNNVVQKQSHMENWVLCRIFLKRRGSAKSGGEGIESIDNISHNKVRNSRVVFYDFLAQNKTSSSSSGSGITELSTNESDEHEEQSSSSNTNTKTLPYFRRKP. 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00014 266 MobiDBLite consensus disorder prediction 224 266 - -
Seca1g00014 266 Pfam No apical meristem (NAM) protein 15 140 IPR003441 GO:0003677|GO:0006355
Seca1g00014 266 MobiDBLite consensus disorder prediction 224 238 - -
Seca1g00014 266 Gene3D NAC domain 23 190 IPR036093 GO:0003677|GO:0006355
Seca1g00014 266 ProSiteProfiles NAC domain profile. 14 186 IPR003441 GO:0003677|GO:0006355
Seca1g00014 266 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 243 - -
Seca1g00014 266 SUPERFAMILY NAC domain 10 186 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00014 Seca-Chr1 407707 409908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00014 1 226 NAC Transcription Factor Family AT5G13180 55.602 3.55e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca1g00014 NAM 2.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00014 - - gmx:100170709 345.51