Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00003 ATGGGTATTTGGGATTACAAATTCTTACTTGGGGTTTCCTCTATCTTCTGGTTGGTATGGGTTTCATCTGGGGAGGTTCCTGATGACAACATTCTAATAGATTGTGGATCCCCCAACAATACTCAGGTGGGGGATCGCTTATTTCAATCTGATAATTCTTCTTCCCACTTGCTTTCAACCTCAGAGTTTATTTTGGCAAAGGCAAACTTCACCCCAATTCCATCATCTTTTGATTCAGACCTGTACCAGACTGCTCTAATCCTTAAAAGTGTTTCTCAATACACATTCCGAATCAAAAAACATGGAAGGCACTGGATTCGCTTGTATTTCTTCCCTTTCAGTTTTGGAAATTATAATATGAGCACTGCAAAATTCTCTGTTTCTGCTCAAAGCTTCACACTGCTCAAAGACTCTCAAATAGACAGTGGTTCTTCACTGAAAGAATACTCTTTGAACATAACTGATAGCCAGCTGGTACTCACTTTTACCCCTTCTCATAGTTCATTTGCCTTTATAAATGCCATAGAAGTTTTATCCATCCCTGACAAGGTCATTCCTGAGCATGTTAGCAGTATGAGCCTACATGGGGTTGAAAAGGTTCTGTGGATGAAGGCATTGGAGACTGTTGCCAGGGTGAACATGGGTAATCAATCAGTGTCTCCCCTTAATGATACTTTGGGGCGTCTATGGGTCTCAGATGATAAATATCTTATACACAATAATCTTGTGGATTTCGTATTCAAAATTGCACCAGTCAATTTCAAAGAAACAAATATTACTGAAGATATTGCTCCATCTAAGGTGTACAGGACTGCTACTAGATTGAGGACAGGTTCAGATCCCAGAACAAATGCTAATGTGACATGGCTTTTTGATGTTGATCCCAGCTTTGATTATCTTGTGCGCTTTCATTACTGTGACATTGTGAACCTACCCCCAAACACTCTCTTCAACGTGTATGTTAACTCTTGGCTTGTTTCTACAATCGATCTTGGCAAAGAAACATCAAATAAATATGGTGCGCCATATTATATGGATGTCATCACTAGTACTACTGGCAGCAGCCGTAGTTTAAATGTTAGTGTTGGTACTTTTAGTATAAGTGAAGCATCTTCACCAGAGGCCATTCTCAATGGGTTGGAAATCATGAAAATCAGTAACTCCAAAGATAGCCTGGTCTTGGTCTTGGATTCAGAGACAAGTGCCAAGACAAAAGTTGGTATAATAGTGGGTTTAGTGACTGGATCTGTGGTTGGTTTTTTGGCTATGGTTATGGGTTTACTTCTTCTGCTTTGCAGAAGAAGAGGAAACAGTCTTCACACTGCTATGGTTATGGGTTTACTTCTTCTGCTTTGCAGAAGAAGAGGAAACAGTCTTCACACTGGTTTTGCTATTAGCAAAGAGGCTAGTAACAATTATGATGGAGCTGCGATTTTTTCAAGGTCAAAAATTGGGTATCGGTTGCCTCTTACAGTAATTCAAGAGGCAACTAATATTTTCAGTGAGGATTTGGTCACTGGTGCTGGTGGTTTTGGGAAGGTTTACAAGGGAGTTTTGAAAGATGAAACAAAGGTAGCTGTGAAAAGAGGGTCATGCCAATCACAACAAGGTCTTGCTGAGTTTCGGACTGAAATTGAGATGTTATCGCAGTTTCGCCATCGCCATTTAGTATCATTGATTGGGTACTGTAATGAACAAAATGAGAGGATCATTATTTACGAGTACCTGGAAAAAGGGAGTCTGAAGAACCATCTGTTCGGATCAGATGCATATGCAACCTGCTTAAGTTGGAGGCAGAGGCTTGAGATTTGCATAGGAGCAGCCAGAGGACTACATTATCTTCACACCGGCTCTGCCAAGGCAATTATTCACCGTGATGTTAAATCGGCAAATATCCTGCTAGATGAAAACTTGACGGCTAAAGTTGCTGATTTTGGTCTTTCAAAGACTGGTCCAGAGATTGATAAGAGACATGTCAGTACAGCAGTGAAAGGAAGCTTTGGCTATCTTGATCCAGAATACTTAATAATGCAGCAGCTGACAGAAAAATCAGATGTTTACTCTTTTGGGGTGGTCATGTTTGAAGTCCTTTGTGGGAGACCAGTAATTGATCCATCACTCCCAAGGGAAAAGGTGAATCTAGTGGAATGGATGATGAAATGGCAGGAAAGAGGCACAATAGAGGAAATTGTAGATCATCTCCTTGCAGTTGCAGGTCAGATAAAGTCAGAGTCACTTCAGATATTCCTAGAGATTGCCACAAAGTGCTTGGCAGAACATGGCATCACCAGGCCTAGCATGGGAGAGGTGTTGTGGCACCTGGAATGTGCTTTGCGACTAGAAGGTGTTGATGAGAGATCCAATCATCGTGGTGGTGTTGCGTCCTCCCAAATGTATCGCTCAGAGACTGGATTATCTTCAATAGAATACAGTATGGGAAGCGTAGATGACCTATCTGGTGTTTCAATGAGCAAGGTGTTTGCCCAAATGGTGACAGAGGATAAGCAGTAG 2511 0.4138 MGIWDYKFLLGVSSIFWLVWVSSGEVPDDNILIDCGSPNNTQVGDRLFQSDNSSSHLLSTSEFILAKANFTPIPSSFDSDLYQTALILKSVSQYTFRIKKHGRHWIRLYFFPFSFGNYNMSTAKFSVSAQSFTLLKDSQIDSGSSLKEYSLNITDSQLVLTFTPSHSSFAFINAIEVLSIPDKVIPEHVSSMSLHGVEKVLWMKALETVARVNMGNQSVSPLNDTLGRLWVSDDKYLIHNNLVDFVFKIAPVNFKETNITEDIAPSKVYRTATRLRTGSDPRTNANVTWLFDVDPSFDYLVRFHYCDIVNLPPNTLFNVYVNSWLVSTIDLGKETSNKYGAPYYMDVITSTTGSSRSLNVSVGTFSISEASSPEAILNGLEIMKISNSKDSLVLVLDSETSAKTKVGIIVGLVTGSVVGFLAMVMGLLLLLCRRRGNSLHTAMVMGLLLLLCRRRGNSLHTGFAISKEASNNYDGAAIFSRSKIGYRLPLTVIQEATNIFSEDLVTGAGGFGKVYKGVLKDETKVAVKRGSCQSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCNEQNERIIIYEYLEKGSLKNHLFGSDAYATCLSWRQRLEICIGAARGLHYLHTGSAKAIIHRDVKSANILLDENLTAKVADFGLSKTGPEIDKRHVSTAVKGSFGYLDPEYLIMQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLVEWMMKWQERGTIEEIVDHLLAVAGQIKSESLQIFLEIATKCLAEHGITRPSMGEVLWHLECALRLEGVDERSNHRGGVASSQMYRSETGLSSIEYSMGSVDDLSGVSMSKVFAQMVTEDKQ. 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00003 836 Gene3D Transferase(Phosphotransferase) domain 1 576 792 - -
Seca1g00003 836 FunFam Receptor-like protein kinase FERONIA 576 795 - -
Seca1g00003 836 SMART serkin_6 500 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00003 836 SUPERFAMILY Protein kinase-like (PK-like) 479 775 IPR011009 -
Seca1g00003 836 PANTHER OS07G0166700 PROTEIN 487 781 IPR045272 GO:0004714|GO:0006468
Seca1g00003 836 Pfam Malectin-like domain 33 385 IPR024788 -
Seca1g00003 836 FunFam Putative receptor-like protein kinase 30 181 - -
Seca1g00003 836 FunFam Receptor-like protein kinase FERONIA 205 387 - -
Seca1g00003 836 CDD STKc_IRAK 507 775 - -
Seca1g00003 836 FunFam receptor-like protein kinase FERONIA 464 575 - -
Seca1g00003 836 ProSiteProfiles Protein kinase domain profile. 500 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00003 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Seca1g00003 836 Gene3D - 204 387 - -
Seca1g00003 836 Gene3D - 30 180 - -
Seca1g00003 836 Gene3D Phosphorylase Kinase; domain 1 461 575 - -
Seca1g00003 836 Pfam Protein tyrosine and serine/threonine kinase 507 715 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00003 Seca-Chr1 191867 195588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00003 1 834 Receptor kinase-like Gene Family AT3G46290 49.710 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca1g00003 Malectin_like 5.6e-30 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00003 - - lang:109328391 1173.3