Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g07032 ATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTTTTTGACCAAAGCCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATATGATTATTTCTACTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTATGAGTTCCATAAATTTAATAGAGAATCAGGGGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCGCTTCAATTTTTGCATAGCCTTGGACTGATACATTGTGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACAGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTTCATATGACAAGAAGATTGATGTCTGGTCACTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAGAATGATTCACCTGCGACATTACTTGCTCGGGTTATTGGGATCATTGGTCCAATTGAACAAAGTATGCTTGCAAAAGGACGGGACACATATAAGTACTTCACCAAAAATCATATGCTTTACGAACGGAATCAGGAAACCAATAGGTTAGAATACTTAATTCCGAAAAAGACATCCTTGAGGCATAGACTACCAATGGGAGACCAAGGCTTCATTGACTTTGTTGCTCATTTGCTTGAGATCAACCCTAAGAAGCGGCCATCTGCATCTGAGGCCCTGAAGCACCCATGGTTATCATACCCGTATGAACCCATATCATCTTGA 867 0.3922 MDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPADKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDVWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIEQSMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEINPKKRPSASEALKHPWLSYPYEPISS. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g07032 288 CDD PKc_DYRK_like 1 279 - -
Seca12g07032 288 Pfam Protein kinase domain 3 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g07032 288 ProSiteProfiles Protein kinase domain profile. 1 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g07032 288 Gene3D Transferase(Phosphotransferase) domain 1 31 279 - -
Seca12g07032 288 SMART serkin_6 1 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g07032 288 SUPERFAMILY Protein kinase-like (PK-like) 3 281 IPR011009 -
Seca12g07032 288 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 279 - -
Seca12g07032 288 ProSitePatterns Serine/Threonine protein kinases active-site signature. 103 115 IPR008271 GO:0004672|GO:0006468
Seca12g07032 288 FunFam Serine/threonine-protein kinase ppk15 56 280 - -
Seca12g07032 288 Gene3D Phosphorylase Kinase; domain 1 3 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g07032 Seca-Chr12 162209441 162213337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g07032 3 280 MAP Kinase Gene Family AT2G46070 28.521 4.79e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Seca12g07032 Pkinase 2.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g07032 - - nnu:104611078 587.8