Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g07023 ATGTTACACAATAACTTATCTCCATCGTCAATTCCCACTTGCGCTCAGAATAATGGTACTGCTACTACTAATAAGAGGAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCGCTGTCTCCGAAGACGTTGTTGGAATCAGATCGTTATGTGTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGACACAAGGTGCCGTGGAAGCTACTGAAGAGGGAGACGGCGGTGGTGAGAAAGAGAGTGTTTGTGTGCCCAGAGCCTTCGTGTCTGCACCATGACCCATGCCACGCCCTCGGTGATCTTGTTGGCATAAAGAAGCATTTCAGAAGGAAACACAGCAATCACAAGCAATGGCTCTGTGAGAGATGCTCTAAAGCCTATGCCGTGCACTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGTTTTATTGAGCATCAAGACGAGTGCAACATGGGGCGGTTAGGAGGAGGAGATCATTGCTTGTCTCGAACAGCTTCAAGATCAAGCCCCAGCCCTTCCACCGAAACCCTTCCTAATTCAGTGATACCACCAAAGCCTCTAAAACAACCCACCATCACCATCACCTCGTCATCACTACTCCTCCATCCCAACTTAGAGCTTCAGCTTTATAATGATCATGCGATTGCTGCTGCACCTAATAATAAGATCAGATCATCAGAATTATCATCACCGAAGGAGAGCAGCAGTACTACCTGCAGTGAGGGAGTTCAAGAGCAGTTGAAGATAGCGATGGCAGAGAAAGCCTATGCGGAAGAGGCAAGGAAGGAGGCCAAGAGGCAGCTTGAACTCGCTGAGTTTGAATTCACAAATGCCAAAAGGATCAGACAAGAAGCCCAATTCCAACTTGAAAAAGCCAATGCCTTGAAGGAGCATGCAATCAAACACATCAATTCAACATTGCTTCAAATCACTTGCCATGCTTGCAAGCAATCACGAATTACCACAACCTCCTTAACACCCCCTCCCCATGGCCATGGATAA 1092 0.4853 MLHNNLSPSSIPTCAQNNGTATTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETAVVRKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWLCERCSKAYAVHSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDECNMGRLGGGDHCLSRTASRSSPSPSTETLPNSVIPPKPLKQPTITITSSSLLLHPNLELQLYNDHAIAAAPNNKIRSSELSSPKESSSTTCSEGVQEQLKIAMAEKAYAEEARKEAKRQLELAEFEFTNAKRIRQEAQFQLEKANALKEHAIKHINSTLLQITCHACKQSRITTTSLTPPPHGHG. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g07023 363 Gene3D Classic Zinc Finger 42 127 - -
Seca12g07023 363 MobiDBLite consensus disorder prediction 1 27 - -
Seca12g07023 363 SMART c2h2final6 131 158 IPR013087 -
Seca12g07023 363 SMART c2h2final6 54 76 IPR013087 -
Seca12g07023 363 SMART c2h2final6 95 125 IPR013087 -
Seca12g07023 363 Coils Coil 277 328 - -
Seca12g07023 363 MobiDBLite consensus disorder prediction 190 214 - -
Seca12g07023 363 SUPERFAMILY beta-beta-alpha zinc fingers 51 77 IPR036236 -
Seca12g07023 363 FunFam protein indeterminate-domain 12-like 33 101 - -
Seca12g07023 363 MobiDBLite consensus disorder prediction 192 206 - -
Seca12g07023 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Seca12g07023 363 MobiDBLite consensus disorder prediction 252 271 - -
Seca12g07023 363 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Seca12g07023 363 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 16 329 IPR031140 -
Seca12g07023 363 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g07023 Seca-Chr12 162146824 162148967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g07023 18 346 C2H2 Transcription Factor Family AT2G01940 58.047 1.08e-134 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g07023 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g07023 K25871 - gmx:100800187 459.914