Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g07022 ATGGAAGGAGGATCAGAGAAGTCGAATTGTGTATACAGAGAGTGTTTGAGAAACCATGCAGCGAGCCTAGGCAGCTACGCCACCGACGGATGCGGCGAGTTTACGGTGGAGGAGATGTCACCGGGAGGGCTACAATGCGCGGCGTGTGGGTGTCATCGCAACTTCCACCGGAAAGTGAAGTACCCGGCGGCGGTGATGGAGTACGGTACTGGTGAAGGAATCAGGGCAATTGAGGGAGGAGAGAGGAGTAGTGGGAGTGGGAAGAAGAGGTTCAGGTCAAAGTTCAGTGCAGATCAGAAGGAGAAGATGCTGGGTTTCGCAGAGAAGCTTGGGTGGAAGTTACAAAGGAAGGATCTGGATGATGAAATAGAGAGGTTCTGCCGAAGTATTGGAGTGAGCAGACAAGTGTTCAAAGTGTGGATGCATAATCATAAGAACTCTTCCTCTTCTAATTCTTCCGCATCTACTGGCAATGTCTCCTCTCTCACCCAGCAGTAA 498 0.51 MEGGSEKSNCVYRECLRNHAASLGSYATDGCGEFTVEEMSPGGLQCAACGCHRNFHRKVKYPAAVMEYGTGEGIRAIEGGERSSGSGKKRFRSKFSADQKEKMLGFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSNSSASTGNVSSLTQQ. 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g07022 165 FunFam Zinc-finger homeodomain protein 2 77 150 - -
Seca12g07022 165 NCBIfam homeobox domain, ZF-HD class 88 146 IPR006455 -
Seca12g07022 165 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 59 IPR006456 -
Seca12g07022 165 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 58 IPR006456 -
Seca12g07022 165 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 147 - -
Seca12g07022 165 MobiDBLite consensus disorder prediction 144 165 - -
Seca12g07022 165 Pfam ZF-HD protein dimerisation region 10 59 IPR006456 -
Seca12g07022 165 SUPERFAMILY Homeodomain-like 79 146 IPR009057 -
Seca12g07022 165 Gene3D - 75 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g07022 Seca-Chr12 162114459 162114956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g07022 12 147 ZF-HD Transcription Factor Family AT4G24660 43.452 1.53e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca12g07022 ZF-HD_dimer 2.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g07022 - - pvu:PHAVU_002G332400g 231.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g07022 12 162114459 162114956 Seca10g04644 10 106482120 106482659 PCT