Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g07016 ATGGCATCAAGGAAAAGCTCAGGGCGTTGTTACGGTGACCCCGAAAGTACACGCGGTGGATCATGGCGGCAATTTGTGATTCATCCTCATAACCGGTGGTACGTTGCGTGGAAGCATTTCATTTTGATATGGGCAGTGTACTCGTCGTTCTTCACTCCGATGGAGTTTGCTTTCTTCAGAGGCTTGCCGGAGAAGATCTTCCTCCTAGACATTGCAGGTCAATTGGCTTTCCTCATAGACATTGCGGTGCGCTTCTTCGTCGGCTATCGCGACACACACTCCTACTGCGTCGTCTATGACCGCACTCAAATTGCCATCAGATACCTCAAGTCTCGCTTCATTCTTGATCTTCTCGGCTGCTTCCCCTGGGATTATATTTACAAGGTTAGTGGGAGGAAAGAGGTGGTGAGATATCTGCTGTGGATCAGGCTAAGCCGAGCTTTCAGAGTAACCGAATTTTTCGAGAGGATGGAGAAAAACATAAGAGTGAATTACCTGTTTACCAGAATTGCGAAACTTCTGGTTGTTGAACTTTACTGCACACATACGGCTGCATGCATCTTCTACTATCTGGCAACCACCATGCCACCCTCAAAGGAAGGTTACACCTGGATTGGCTCCTTGAAGATGGGTGACTATGCCTACTCTGACTTCAGACACATCGATCTCTGGAAGCGTTACATCACATCACTCTACTTTGCGATTGTTACCATGGCAACTGTTGGCTATGGAGACATTCATGCAGTCAATGTGAGAGAAATGATATTCATCATGATTTATGTCTCCTTTGACATGATTCTCGGCGCTTACCTTCTCGGCAATATGACCGCATTGATTGTCAAGGGATCAAAAACAGAGAGGTTCAGGGATAAAATGGCTGAAATCATGAAATACATGAATAAAAACAATCTCGACAACCGCATAAGTAATGCCATCAAAGATCACTTGCGCTTGCAGTATGATCGCAGTTACGCTGACCCTTCTGTTCTTCACCATATCCCAACCACCATCCGCACACAGATTTCAATAACGTTGTATGAGCAGTTCATTCAGAAAGTTCCTCTTTTCAAGGGATGCTCTTCAGGGTTTATTAAGCAGATTGCAACCAAAGTCCATGAAGAGTTTTTCCTCCCAGGAGAATTGGTTATGGAGCAAGGAGATGTAGCAGATCAACTTTACTTTGTATATCAGGGTGAGCTGCATGAGATTACTAGGGAAGATGGTGATACAGAAGAGACAATCATATTGCACACCTATAGTACCTTTGGCGAAGTTTCTTTTCTTTGCAATATGCCTGAAACTTCCATAGTTCAGGCCCATGAATTTTGCAAGGTTTTGCGTCTCGATAAGAAATCGTTTACAGATATACTGAAGATATTCTTCTTAGATGGTCGCACTATCTTCAACAATCTCATTGAGGTAAAAGACTCTAGCATTCAGCGTAAGCTTTTGGAATCAGACTTCAACCTGACTATAGGAAACCAGGAAACAGAGCTAGCTATGAGGATGAACTGTGCTGCCTATGATGGTCACCTTGACCTTTTGAAAGGTTTGATTGGATCAGGGGCAGATCCCAATAAGACTGATTATGATGGCAGATCACCCTTGGTATAA 1614 0.4393 MASRKSSGRCYGDPESTRGGSWRQFVIHPHNRWYVAWKHFILIWAVYSSFFTPMEFAFFRGLPEKIFLLDIAGQLAFLIDIAVRFFVGYRDTHSYCVVYDRTQIAIRYLKSRFILDLLGCFPWDYIYKVSGRKEVVRYLLWIRLSRAFRVTEFFERMEKNIRVNYLFTRIAKLLVVELYCTHTAACIFYYLATTMPPSKEGYTWIGSLKMGDYAYSDFRHIDLWKRYITSLYFAIVTMATVGYGDIHAVNVREMIFIMIYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMAEIMKYMNKNNLDNRISNAIKDHLRLQYDRSYADPSVLHHIPTTIRTQISITLYEQFIQKVPLFKGCSSGFIKQIATKVHEEFFLPGELVMEQGDVADQLYFVYQGELHEITREDGDTEETIILHTYSTFGEVSFLCNMPETSIVQAHEFCKVLRLDKKSFTDILKIFFLDGRTIFNNLIEVKDSSIQRKLLESDFNLTIGNQETELAMRMNCAAYDGHLDLLKGLIGSGADPNKTDYDGRSPLV. 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g07016 537 Gene3D - 475 537 IPR036770 -
Seca12g07016 537 ProSiteProfiles cAMP/cGMP binding motif profile. 355 457 IPR000595 -
Seca12g07016 537 PANTHER POTASSIUM CHANNEL AKT1 18 536 IPR045319 GO:0005249|GO:0006813
Seca12g07016 537 SMART cnmp_10 355 472 IPR000595 -
Seca12g07016 537 PRINTS EAG/ELK/ERG potassium channel family signature 227 244 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g07016 537 PRINTS EAG/ELK/ERG potassium channel family signature 70 80 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g07016 537 PRINTS EAG/ELK/ERG potassium channel family signature 47 54 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g07016 537 PRINTS EAG/ELK/ERG potassium channel family signature 271 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g07016 537 PRINTS EAG/ELK/ERG potassium channel family signature 179 189 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g07016 537 Gene3D - 35 281 - -
Seca12g07016 537 Gene3D Helix hairpin bin 282 338 - -
Seca12g07016 537 SUPERFAMILY Ankyrin repeat 462 536 IPR036770 -
Seca12g07016 537 FunFam Potassium channel SKOR 35 280 - -
Seca12g07016 537 SUPERFAMILY cAMP-binding domain-like 283 471 IPR018490 -
Seca12g07016 537 Gene3D Jelly Rolls 339 474 IPR014710 -
Seca12g07016 537 FunFam Potassium channel KAT2 343 478 - -
Seca12g07016 537 SUPERFAMILY Voltage-gated potassium channels 28 280 - -
Seca12g07016 537 Pfam Cyclic nucleotide-binding domain 375 458 IPR000595 -
Seca12g07016 537 CDD CAP_ED 355 457 IPR000595 -
Seca12g07016 537 Pfam Ion transport protein 36 280 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g07016 Seca-Chr12 162068673 162074797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g07016 23 537 Ion Channels AT3G02850 65.891 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g07016 K21867 - gmx:100798698 828.165