Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g07011 ATGAGCTTGCAGCGGAGGGATAGGTACAGTCACAGGGTTCCTCGTCAACAATGGATTCCTAGAGCATCCAATAGTGAGCTGCAGCAGTTAGATGAGAAGAACGGTGGTGATGTTGGTTCCTCTGCCCATACAAGTGGAAGGAGTGGTCGTGCTTTCAGGAACCGTGAAGATTTACCTCAGCTTCTACAAGAGATTCAGGACAAGCTCACCAAAGGCGCTGTCGAATGCATGATTTGCTATGACGCCGTGCGGAGGTCTGCGCCTATCTGGTCATGCTCTAGTTGCTACTCTATCTTTCACCTTAATTGTATAAAGAAGTGGGCTCGAGCACCCTCTTCCATTGCAGATGCAGACATGAATCGAGGCTTTAATTGGCGCTGCCCTGGTTGTCAATCTGTGCAACTCACATCATCCAACCACATTCGGTATCTTTGCTTCTGTGGCAAGACCCCAGACCCACCATCCGACTTGTATCTCACGCCACATTCCTGTGGAGAATCCTGTGGGAAGCCTCTTGAGAAACCCCAACCTGATAAGGAGAATCTTTGCCCTCATCTTTGCGTTTTGCAATGCCATCCGGGTCCTTGTCCTCCTTGCAAAGCTTTTGCTCCACCACGCCTTTGTCCTTGTGGGAAGCAAAATATCACCACTCGATGCTCTGACCGCCATTCTCTCATTACTTGTGGTCAAAACTGCGATAAGCTTCTTGAATGTGGGCGTCATAGGTGTGACCGAATTTGTCATCTGGGTCCCTGTGATCCTTGTCGTGTCCCAATCAATGCCTCTTGCTTTTGCAGCAAACAGATGGAGGTTATTCTCTGTGGGGACATGGCTGTGAAGGGTGAAATCAGAGCACAAGGTGGAGTTTTTTCTTGTGGTTCCACTTGTGGAAAGAAGCTTGGTTGTGGTAATCATATCTGTATTGAGACTTGTCATCCAGGTATCTGTGCCGAGTGTGACTTGTTGCCAGCCCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGGAGGAACGCCAGAGTTGTTTAGACCCAATACCTACCTGTTCAAAGGTATGTGGCAAGTCACTTCCTTGCAGGATGCATCATTGTAAAGAGGCGTGTCATGCTGGGGATTGTTCTCCTTGTATGGTTCTAATCTCTCACAAGTGTCGATGTGGCTCAACTTCTCGAACCGTGGAGTGCTATAAGACAACGATGGAGGATGAGAAATTTACTTGTGAAAAGCCTTGTGGGCGGAAAAAGAGTTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAGTATGCCAAGTTCGGATTGGGATCCACACTTGTGTTCCATCCCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCCTGTGAATCCCTGTGTCACAGTGGTCATTGTCCACCTTGCCTTGAAACTATATTCACTGATTTGACATGTGCCTGTGGCGGGACTTCAATCCCACCTCCATTGCCTTGTGGTACACCACTTCCCTCATGTCAGCTTCCATGTTCACTTCCTCAACCTTGTGGCCATCCAGCCTCCCACAGCTGCCATAATGGAGACTGTCCTCCTTGTTTAGTGCCCGTAGCAAAAGAATGTATTGGTGGACATGTACTTCTTAGAAACATACCTTGTGGTTCAAAGGATATTAGATGTAATAAGCTCTGTGGTAAGACCAGACAGTGCGGCTTACATGCTTGTGGCAGAACATGTCACCCTTCACCTTGTGATAATCAGTCTGCTGAGCAAGGTATCCAATCATCTTGTGGACAAACATGTGGTGCTCCAAGGAGAGACTGTCGGCATACATGTGCAGCTCCTTGTCATCCTTCATCTCCATGCCCAGATATAAGATGTGAATTCCCTGTCACAATTACTTGTTCTTGTGGCCAAATAAGAGCAAATGTTCCTTGTGATGCTGGTGATAGCAATTCTGATGCCATACATGAAACTTCCATCATTCAAAAGTTGCCTGTGCTTCTTCAACCGGTGGATGCAAATGGCAAAAAAGTTCCCCTTGGACAAAGAAAACTGATGTGTAACGAGGAGTGCGCTAAGTTGGAGCGGAAAAGGGTTCTTGCAGATGCTTTTGAGATTAACACTCCCAATCTAGATTCTCTCCATTTTGGTGAGAATTCTGTTGCATCTGAATTGCTTGCTGATATGATGAGACGCGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAATTCTTAGTACTAGGCAAGAGCAAAAGAACTACACATGGTCTAAAAGTCCATGTTTTCTGTCCCATGCTAAAGGATAAGAGAGATGCAGTGATGGTGATTGCTGAGAGATGGAAGCTTGCAGTGAATGCAGCTGGTTGGGAGCCAAAGTGTTTTATAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTTCACGTGTGCTAGGAGTTAAGGGTACGACAACTATACATGCGCCCCTTCCTCCTGCATTTGATCCTTTGGTAGACATGGACCCACGACTTGTAGTCTCTTTACCAGACTTACCAAGGGGTGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCATTGGCTGTTTTTAATGATCCTGCTCGAGCTACAACTGCAATGAGGAGGTTGGATCATGGAACTGTTTATCAAGGAGCTATTGTGGTTGTTCCAAATATTGGGGCATCCGTAGCATCTTCAGCTACCAATGCCTGGGGAGGAGGTGGGACAATGAAAGGAGGAGCACTGGCAGCATTGAAGGGTAATCCGTGGAAAAAGGCTGTTGTTCAAGAGCCAGGTTGGAGAGAAGATTCTTGGGATGATGAGGAGTGGACTACTGGTTCTGCTTTTTGGAAGAAAGAAGACCCAATACCTGCTTCATTAAATCCTTGGAGTGTCTTGCATCCAAAATTGCCTCCAAGTTCATCTGAAAGTAGTGTTGTCACAAAGTTGGAGCCTCATGATGGTGGTTCAAATCTAAATCTAGAAGGGAAGCACGAAGGAAACTTTGACGTATTGGAAGTTTATGATGATGTAGTAGATGATTGGGAGAAGGCTTGCGAATGA 3093 0.4601 MSLQRRDRYSHRVPRQQWIPRASNSELQQLDEKNGGDVGSSAHTSGRSGRAFRNREDLPQLLQEIQDKLTKGAVECMICYDAVRRSAPIWSCSSCYSIFHLNCIKKWARAPSSIADADMNRGFNWRCPGCQSVQLTSSNHIRYLCFCGKTPDPPSDLYLTPHSCGESCGKPLEKPQPDKENLCPHLCVLQCHPGPCPPCKAFAPPRLCPCGKQNITTRCSDRHSLITCGQNCDKLLECGRHRCDRICHLGPCDPCRVPINASCFCSKQMEVILCGDMAVKGEIRAQGGVFSCGSTCGKKLGCGNHICIETCHPGICAECDLLPARIKTCCCGKTRLKEERQSCLDPIPTCSKVCGKSLPCRMHHCKEACHAGDCSPCMVLISHKCRCGSTSRTVECYKTTMEDEKFTCEKPCGRKKSCGRHRCSERCCPLSNPNSMPSSDWDPHLCSIPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGGTSIPPPLPCGTPLPSCQLPCSLPQPCGHPASHSCHNGDCPPCLVPVAKECIGGHVLLRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHPSPCDNQSAEQGIQSSCGQTCGAPRRDCRHTCAAPCHPSSPCPDIRCEFPVTITCSCGQIRANVPCDAGDSNSDAIHETSIIQKLPVLLQPVDANGKKVPLGQRKLMCNEECAKLERKRVLADAFEINTPNLDSLHFGENSVASELLADMMRRDPKWVLSVEERCKFLVLGKSKRTTHGLKVHVFCPMLKDKRDAVMVIAERWKLAVNAAGWEPKCFIVVHVTPKSRAPSRVLGVKGTTTIHAPLPPAFDPLVDMDPRLVVSLPDLPRGADISALVLRFGGECELVWLNDKNALAVFNDPARATTAMRRLDHGTVYQGAIVVVPNIGASVASSATNAWGGGGTMKGGALAALKGNPWKKAVVQEPGWREDSWDDEEWTTGSAFWKKEDPIPASLNPWSVLHPKLPPSSSESSVVTKLEPHDGGSNLNLEGKHEGNFDVLEVYDDVVDDWEKACE. 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g07011 1030 ProSitePatterns Zinc finger PHD-type signature. 76 130 IPR019786 -
Seca12g07011 1030 CDD NF-X1-zinc-finger 292 335 - -
Seca12g07011 1030 SUPERFAMILY RING/U-box 75 136 - -
Seca12g07011 1030 Pfam NF-X1 type zinc finger 456 473 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 566 581 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 418 429 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 597 622 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 354 377 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 185 200 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 302 319 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 513 529 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 Pfam NF-X1 type zinc finger 238 256 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 CDD NF-X1-zinc-finger 446 498 - -
Seca12g07011 1030 ProSiteProfiles Zinc finger RING-type profile. 76 131 IPR001841 -
Seca12g07011 1030 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 28 951 IPR034078 GO:0003700
Seca12g07011 1030 CDD NF-X1-zinc-finger 228 276 - -
Seca12g07011 1030 MobiDBLite consensus disorder prediction 31 48 - -
Seca12g07011 1030 SMART znfxneu3 604 625 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 183 201 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 566 595 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 456 475 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 238 257 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 360 379 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 418 448 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 302 321 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 SMART znfxneu3 513 531 IPR000967 GO:0005634|GO:0008270
Seca12g07011 1030 CDD NF-X1-zinc-finger 350 398 - -
Seca12g07011 1030 CDD NF-X1-zinc-finger 503 551 - -
Seca12g07011 1030 CDD RING-CH-C4HC3_NFX1-like 75 131 - -
Seca12g07011 1030 MobiDBLite consensus disorder prediction 31 50 - -
Seca12g07011 1030 CDD NF-X1-zinc-finger 164 221 - -
Seca12g07011 1030 ProSiteProfiles Zinc finger PHD-type profile. 73 133 IPR019787 -
Seca12g07011 1030 MobiDBLite consensus disorder prediction 984 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g07011 Seca-Chr12 162044307 162047399 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Seca12g07011 zf-NF-X1 71 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g07011 K12236 - gmx:106799700 1731.84