Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g07008 ATGGCGATGGTGCCTCACAAGCACAAACACAGACACAGACACAGACACTCTTTTCAGTTACTCCTCACGCTTCTCCTATTTCTTGGAATTCGTGAATCACAAGCAGATCTCACTTCCGAGCGAGCTGCATTGCTCTCTCTCCGTTCTGCCGTCGGCGGTCGAACTCTTCTCTGGAATCTCACCAACCAGAGCCCTTGCAACTGGGCCGGCGTCCAATGCGAACACGACCATATCGTCGAGCTTCACCTTCCCGGCGTTGCTCTTTCCGGCCAATTACCTACCGGAATATTCAGCAACCTCACACACCTCCGCACTCTCAGCCTCCGTTTCAACGCACTCACAGGTTCACTCCCTTCAGATCTGGCCTCCTGCGTCAATCTCAGGAACCTCTACTTGCAGCGGAACTTACTCTCCGGTGAAATCCCACAGTTCCTTTTCCGGTTACCGGACTTAGTTCGCCTCAACATGGCCTTCAACAACTTCTCCGGTCCCTTTCCAACCGATTTCAACAACTTGCCAAGGCTCAAAACACTCTTCCTCGAAAATAACCAGATTTCGGGTCCTATCCCTGAATTGAACAAGCTCCAACTGGATCAGTTCAATGTATCCAACAATTTGCTCAATGGCTCTGTTCCCCTCAAGCTCCAGACATTCTCTCAGGATTCCTTTCTGGGGAATTCCCTCTGTGGCAAACCCCTCTCTCTCTGCCCTGGAACCACCGATGCTTCTTCTCCTTCTTCTTCGGTTGATAATGCTGGAGGAAGCACTTCCCATAAGAAGAAGAACAAGTTGTCTGGCGGAGCCATTGCCGGAATCGTTATTGGATCCGTGGTGGGACTTCTGTTGGTTGCTTTCCTTTTGATCCTCTTGTGTAGGAAAAAGAGTAGCAAGAAGACCACTGCTGTTGAAGTTGCAGCAATGAAGCATCCTGAATCGGAAGTTCCTTCTGAGAAGCCCCTTTACGACGTGGAGAACGGCAATGGGCACTCCGCGGCGGCGGCAGCGACTGCCGCTGCGGCGGTTGCTGTAGCTGCGGGTTCTACCAACAAGGTTGAAGCCAATGGTGGTGGAGCGAAAAAGTTGGTGTTTTTTGGAAATTCGGCTAGGGGGTTTGATCTGGAGGATTTGCTGAGAGCTTCGGCGGAGGTGTTGGGAAAAGGGACTTTCGGAACGGCGTATAAGGCGGTGTTGGAGTCCGGGCCGGTGGTGGCGGTGAAAAGGTTGAAGGATGTTACCATTTCGGAGAAGGAGTTCAAAGATAAGATTGAATCTGTGGGAGCAATGGATCATCAAAATTTGGTTCCTCTGAGGGCATACTATTTCAGCAGAGATGAGAAGCTGCTTGTTTATGATTACATGCCAATGGGAAGCTTATCTGCGCTTTTGCATGGAAACAAAGGAGCAGGTAGGACACCACTGAATTGGGAAATCAGATCAGGCATTGCACTTGGAGCTGCTCGTGGCATTGAGTACCTACATTCACAAGGGCCTAATGTTTCCCATGGAAACATAAAGTCGTCTAATATCCTCTTAACAAAATCCTACGATGCCAGAGTATCTGATTTTGGCCTTGCACACCTTGTTGGTCCTTCCTCTACCCCCAACCGTGTTGCTGGCTACCGTGCTCCTGAAGTAACTGATCCTCGCAAAGTATCTCAAAAGGCAGATGTTTACAGTTTTGGTGTGTTGTTGTTGGAACTTCTGACTGGGAAGGCACCTACTCATGCTCTCCTAAATGAGGAAGGAGTAGACCTCCCCAGATGGGTTCAATCCGTGGTTAGAGAAGAGTGGACATCTGAGGTATTTGATCTTGAGCTCCTTAGGTATCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAACTTGCAGTTGATTGTGCAGCACCATACCCTGATAAGCGCCCTTCAATGTCTGAAGTCACAAGGAGCATACAAGAGTTACGTCGGTCTAGCTTGAAAGAGGACCAAGACCAAATCCAACATGATCAGACCAATGATATAGAATTATAG 2010 0.491 MAMVPHKHKHRHRHRHSFQLLLTLLLFLGIRESQADLTSERAALLSLRSAVGGRTLLWNLTNQSPCNWAGVQCEHDHIVELHLPGVALSGQLPTGIFSNLTHLRTLSLRFNALTGSLPSDLASCVNLRNLYLQRNLLSGEIPQFLFRLPDLVRLNMAFNNFSGPFPTDFNNLPRLKTLFLENNQISGPIPELNKLQLDQFNVSNNLLNGSVPLKLQTFSQDSFLGNSLCGKPLSLCPGTTDASSPSSSVDNAGGSTSHKKKNKLSGGAIAGIVIGSVVGLLLVAFLLILLCRKKSSKKTTAVEVAAMKHPESEVPSEKPLYDVENGNGHSAAAAATAAAAVAVAAGSTNKVEANGGGAKKLVFFGNSARGFDLEDLLRASAEVLGKGTFGTAYKAVLESGPVVAVKRLKDVTISEKEFKDKIESVGAMDHQNLVPLRAYYFSRDEKLLVYDYMPMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDKRPSMSEVTRSIQELRRSSLKEDQDQIQHDQTNDIEL. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g07008 669 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Seca12g07008 669 Gene3D Phosphorylase Kinase; domain 1 344 452 - -
Seca12g07008 669 Pfam Protein kinase domain 381 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g07008 669 MobiDBLite consensus disorder prediction 238 262 - -
Seca12g07008 669 Pfam Leucine rich repeat 91 137 IPR001611 GO:0005515
Seca12g07008 669 MobiDBLite consensus disorder prediction 647 669 - -
Seca12g07008 669 FunFam Probable inactive receptor kinase At1g48480 453 656 - -
Seca12g07008 669 PANTHER OS05G0588300 PROTEIN 20 653 - -
Seca12g07008 669 SUPERFAMILY L domain-like 55 216 - -
Seca12g07008 669 SUPERFAMILY Protein kinase-like (PK-like) 382 646 IPR011009 -
Seca12g07008 669 Gene3D Transferase(Phosphotransferase) domain 1 453 668 - -
Seca12g07008 669 ProSiteProfiles Protein kinase domain profile. 378 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g07008 669 ProSiteProfiles Leucine-rich repeat profile. 174 196 IPR001611 GO:0005515
Seca12g07008 669 CDD STKc_IRAK 384 647 - -
Seca12g07008 669 FunFam pollen receptor-like kinase 1 347 452 - -
Seca12g07008 669 Pfam Leucine rich repeat N-terminal domain 39 73 IPR013210 -
Seca12g07008 669 FunFam Probable inactive receptor kinase RLK902 37 193 - -
Seca12g07008 669 Gene3D Ribonuclease Inhibitor 39 148 IPR032675 -
Seca12g07008 669 Gene3D Ribonuclease Inhibitor 150 236 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g07008 Seca-Chr12 162009075 162012559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g07008 36 648 Receptor kinase-like Gene Family AT1G48480 65.484 0.0 807
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g07008 Pkinase 1.2e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g07008 - - gmx:100818955 1011.52