Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g07000 | ATGTCTTTTCTCTTAGATGATTGCAAGGAGCACTTGCTGCAGGTGGATGGCTACGCTAATGGACACGACCACACCAAACCCAAATTTCAGATAAGAAATCTCACCAAAGTCTCCGACGATGGCCTTCCCATTCTCAAAGGCATCAACGTTGACATCCCAAAGGGTGTCATCGTTGGGATCATAGGCCCCAGTGGCAGCGGCAAATCAACGCTCTTGAGGTCCCTCAACCGTCTCTGGGAGCCACCCTCCGCCTCCGTCTTCCTTGACGGCGTTGACATCTGCGATCTCGACGTTCTCTCCCTCCGCCGTAAGGTTGGGATGCTCTTTCAGCTCCCTGCCCTCTTTGAAGGCACAATTGCAGACAATGTGAGGTATGGCCCACAACTAAGAGGTAAAAAGCTAACCGATGATGAGGTTCGCAAGTTGCTGGTATTGGCGGACTTAGATGCTTCTTTCATGGATAAGTCCGGTGCTGAGCTCTCTGTGGGTCAAGCTCAAAGAGTTGCACTTGCCAGGACTTTAGCTAATTCACCAGAGGTTTTGCTGCTGGATGAGCCAACTAGTGCGTTAGATCCAATATCCACAGAAAACATAGAGGATGCCCTGATGAAGCTGAACAAGAATCGGGGCATGACAATGATCATGGTCTCTCATAGCATCAAACAAATCCAGAGGATAGCTGATGTAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTGAAGCCTGATGAACTCTCTGAAGCCAAGCATCCCATGGCGCAGAGGTTTCTTGAACTTAGTTCTTAG | 792 | 0.4912 | MSFLLDDCKEHLLQVDGYANGHDHTKPKFQIRNLTKVSDDGLPILKGINVDIPKGVIVGIIGPSGSGKSTLLRSLNRLWEPPSASVFLDGVDICDLDVLSLRRKVGMLFQLPALFEGTIADNVRYGPQLRGKKLTDDEVRKLLVLADLDASFMDKSGAELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEDALMKLNKNRGMTMIMVSHSIKQIQRIADVVCLLVDGEIVEVLKPDELSEAKHPMAQRFLELSS. | 264 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g07000 | 263 | FunFam | ABC transporter, ATP-binding protein | 26 | 258 | - | - | |
Seca12g07000 | 263 | ProSitePatterns | ABC transporters family signature. | 160 | 174 | IPR017871 | GO:0005524|GO:0016887 | |
Seca12g07000 | 263 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 29 | 260 | IPR003439 | GO:0005524 | |
Seca12g07000 | 263 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 28 | 250 | IPR027417 | - | |
Seca12g07000 | 263 | CDD | ABC_PstB_phosphate_transporter | 29 | 247 | IPR005670 | GO:0005315|GO:0016020|GO:0035435 | |
Seca12g07000 | 263 | Gene3D | - | 26 | 262 | IPR027417 | - | |
Seca12g07000 | 263 | Pfam | ABC transporter | 45 | 188 | IPR003439 | GO:0005524 | |
Seca12g07000 | 263 | PANTHER | ABC TRANSPORTER I FAMILY MEMBER 17 | 6 | 262 | IPR005670 | GO:0005315|GO:0016020|GO:0035435 | |
Seca12g07000 | 263 | SMART | AAA_5 | 54 | 237 | IPR003593 | GO:0016887 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g07000 | Seca-Chr12 | 161949652 | 161951498 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g07000 | 42 | 247 | Calmodulin-binding Proteins | AT2G36910 | 33.962 | 4.10e-30 | 117 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g07000 | K02068 | - | gmx:100791365 | 407.912 |