Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06994 ATGGAAGACCTCATCGGCCTTCTAAGGATTCACATCAAGCGAGGCGTCAACCTCGCTGTTCGTGATGTCAGCACTAGTGATCCATACGTCGTCGTTAAGATGGGTCATCAGAAACTGAAGACTCGTGTGATAAAAAAGGACATCAATCCTGAGTGGAATGAAGAGCTTACACTTTCTGTTACACATCCTGTTGTTCCATTCTTACTGACGGTGTATGACCATGACACTTTTACCAAAGATGACAAAATGGGAGATGCAGAATTTGATCTATCACCATATATAGAAGCCTTGAAGATGAACTTAGAAGACCTGCCAAGTGGTACCATAATCACAAGAATACACCCGTGCAGACAAAACTGCTTGGCAGAGGATAGCTGCATCACTTATGATGATGGCAAAATTGTCCAAAATGTTGTCCTTAGATTGCGACACGTGGAGTGTGGTGAAGTGGAATTGCAATTACAATGGATTGATCTTCCTGGTGCCAAGGGTTTATCTTAA 501 0.4271 MEDLIGLLRIHIKRGVNLAVRDVSTSDPYVVVKMGHQKLKTRVIKKDINPEWNEELTLSVTHPVVPFLLTVYDHDTFTKDDKMGDAEFDLSPYIEALKMNLEDLPSGTIITRIHPCRQNCLAEDSCITYDDGKIVQNVVLRLRHVECGEVELQLQWIDLPGAKGLS. 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06994 166 CDD C2_ArfGAP 5 148 - -
Seca12g06994 166 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Seca12g06994 166 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 91 IPR035892 -
Seca12g06994 166 Pfam C2 domain 6 92 IPR000008 -
Seca12g06994 166 SMART C2_3c 7 102 IPR000008 -
Seca12g06994 166 Gene3D C2 domain 2 164 IPR035892 -
Seca12g06994 166 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06994 Seca-Chr12 161906948 161908545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06994 38 166 C2H2 Transcription Factor Family AT1G70790 58.015 2.43e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06994 - - gmx:100799469 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06994 12 161906948 161908545 Seca10g04756 10 109318237 109320816 PCT