Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06991 ATGTGGATGGTGGGTTACAATGAAGGTGGTGAGTTCAACTGCAACAACATGGCTGATTATCCATTCAATGGAAGGAAACTCAGGCCTCTGATGCCAAGGCCAGTGACTACTTCTCCTAACAACACTTCAGCTACAAACACTCCTTGCTTGAACCGCATTCATGGCAACGATTTCTTTTCACAATATCACAACCTGGAAGCAGCAGCATCAGTGGCAGAGCAGAACAAGAGAGAGTTCAATACTCCACCAGTTGTGGTGAGCTCAAGGTGGAATCCAACCCCAGAACAGCTAAGAGCACTGGAAGAATTGTATAGGAGAGGAACAAGAACACCATCTGCGGAACAAATCCAGCAAATCACTGCACAGCTTAGAAGATATGGAAAAATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCCAGAGAAAGGCAGAAACGCCGCCGTCAAATGGAATCAGCTGCTGAGGGTCACACCCGTGACTTTGATAATACTACTCTTGAAATTGAAAAGAATAATAAGGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGCAGCAAAAGCAGCAATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAATTACAGCAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCATATGATGCAGTTATCTTGTCCTCACCCTCCTACAGTTACCCCACACCACCACCTCATAAACACACCTCCTAATAACAGTAACACCTCTACAACTAGCATGGCCTCCACAACCACAGTAGCAGCTACAGTAATGGACCCAAAACTCATTAAGACCCATGATCTCAGCTTCTTCATTTCACCTCACACTCACAGACAAAATGGTATTGTCCACTTAAGCAATATCACCACCGAGGGTGATAATAATTGTGAGGAATCTCAAACCCTTCAACTTTTCCCAATAAGGAATGGGGATGGTAGCAGTGATAACATTAACCAACAAAACGAGACAGAGATATCAGATTCAGCAATGAATGCACCGAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1134 0.4374 MWMVGYNEGGEFNCNNMADYPFNGRKLRPLMPRPVTTSPNNTSATNTPCLNRIHGNDFFSQYHNLEAAASVAEQNKREFNTPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHTRDFDNTTLEIEKNNKDLGASRTVFEVEQTKNWAPSTNCSTLAEESVSIQRAAKAAIAECRTDGWLQFDEGELQQRRNFMERNATWHMMQLSCPHPPTVTPHHHLINTPPNNSNTSTTSMASTTTVAATVMDPKLIKTHDLSFFISPHTHRQNGIVHLSNITTEGDNNCEESQTLQLFPIRNGDGSSDNINQQNETEISDSAMNAPSQFFEFLPLKN. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06991 377 SMART HOX_1 85 152 IPR001356 GO:0003677
Seca12g06991 377 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 73 371 IPR044555 GO:0003700|GO:0099402
Seca12g06991 377 ProSiteProfiles 'Homeobox' domain profile. 93 148 IPR001356 GO:0003677
Seca12g06991 377 FunFam WUSCHEL-related homeobox 4 87 154 - -
Seca12g06991 377 CDD homeodomain 89 149 IPR001356 GO:0003677
Seca12g06991 377 Gene3D - 86 147 - -
Seca12g06991 377 Pfam Homeodomain 88 147 IPR001356 GO:0003677
Seca12g06991 377 SUPERFAMILY Homeodomain-like 88 154 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06991 Seca-Chr12 161886445 161889527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06991 1 377 Wox Gene Family AT3G18010 41.371 1.05e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca12g06991 Homeodomain 8.6e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06991 - - gmx:100777274 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06991 12 161886445 161889527 Seca12g06991 12 161886445 161889527 ECH