Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06980 ATGAAGAACATTCTTAAGAAGCTTCATATCATGTCTAATCAATCAGAAGATGCCCAAGGGTCTACTACTCCATCAAAGAGCAACAAGTCCAATGATGGTTCGTCTTCATCCCCTACTGCTAAGAAGCTTTCCAACTGGTTGCATTCAGTTTCTAATAGGCAGAGTCCTAGTCCTCCATCTCCCAACCTGGCAAGAGGAGAAAGAGTGGAGCCATCTGATACAGTGAGCAGTGGTGATTTAGATATTGTTTCTGAGTCAGTGAGGCGTGATTCAGGGTCTACCACTTCGAGGGATCCTGAAGTGGAAGAAGAATATCAGATACAGCTTGCTTTAGAGCTGAGTGCAAAGGAGGATCCTGAGGCTGTACAGATTGAAGCTGTTAAGCAGATCAGTTTGGGATCTTGTGACCCTGATAATACACCAGCTGAAGTTGTGGCCTACCGATACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTCAGATGGTTTCTATGATCTGTATGGAATCTTAACTGAGTCAACCTCCACAAGAATGCCTTCTCTTATAGATCTGCAAGAAACACCAACCTCAGAAATTGTCACATGGGAAGCAATCTTGGTCAATAGGGCTGCTGATTCCAATTTGTTGAAACTTGAGCAAAAAGCCCTGGAGCTGGTGGTCAATTCAAGAAAAGATTTTGAAGTAGTTAGAGATAGTAATTTGGTGCGCAAGCTTGCAATAATAGTGGCTGACTATATGGGTGGATCAGTTGAAGATCCTGAAAGCATGTCAAGAGCATGGAGGAGTCTCAGTTACAGTCTAAAAGCAACAATCGGTAGCATGGTTTTGCCACTTGGTTCACTGACCATTGGATTGGCTCGGCATCGCGCATTGTTATTTAAGGTTTTAGCTGATAGTTTGGGCATCCCATGTCGATTGGTGAAGGGACTGCAGTATACAGGTTCTGATGATGTAGCGATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTTGATCTCATGGCCGCTCCTGGAACACTTATTCCATCTGATGCAACTGGATCTCATATCGAGTATGATGAATCTTCTTTTGTAGCCACTCCTTCATCAAGAGACCTTGATTCGTCTCATATTGCATCATTCAGCAGTGGGGTGGGAAGTTCATCTGAAGAAACTTCAGAGTTTGGGACTCTTGATAGAGGAAACAGGTCAAAACATTTTGTGTATTCAGGGAAAGAATCTGATGTAAGCAGGTCCACTGCCGGCAAGGAAGAATTAAAGAAATCGTTAAATGAATTTAAAAATATCCCCAATGTAGAGAAGGTCAGAGCAAGGGAATCTCTTAGCAGACCTAATTATCCATATATGCATGGAAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACATAGAATGAAAGTCAAAGATGTTTCCCAATATATGATGGATGCTGCGAAGGAGAACCCTAACTTAGCTCAAAAACTTCATGATGTATTACTTGAAAGTGGCGTTGTTGCTCCTCCAAACTTATTTTCTGAAATGTATCATGAGCAGTTAAGTTCCATAACAGAGGCCAATCTTTCAACTGAAGAAAAAGATGAATATAAACAGGGAAGTGTACAGCAGGAAACTAAGGTTGCAGATAATCTAGGTCCTCCTCGATTTTTGCCTCCATTACCTCACCTCAAAGTTCATCCCAAAGCAAGTCCTAGCAGCCAGATGGAGCATTCAAAGCCTGTAGAAGGTTTAGGAATCAGCCTTCCTCTTGATACAAGGGAAGCTTCTGAACAGAACATATCATCCCAGGCTGAAGCAAGTCAAGTAAAGTATGCTGCCGCAGCTGCTGCTGCTGCTGTTGTTGCATCTTCTATGGTAGTTGCTGTGGCAAAGTCAGGCACTGACTCAAATTTTGATATTCCTGTAGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTTGTAGCAACCACTGCTGCTGTCAGTAAACAGTATGAGCAGGGCAGCCGAAGTGATGGAGATACAGAGAGTACTGGTTATGAGCCGAAGGTTAGTGGTGACGGAGAGCATAATGCTTTAGGAGCAAACTCAGAAGGCGAGAGAAAATCTGATAGATCAGTAAGTAATGATAGCACAAAATCTGATTCTGCACTAGATGATGTTGCCGAATATGACATTCCATGGGAGGAAATCAAGATGGGTGAGCGTATCGGACTTGGATCATATGGTGAAGTGTACCGTGGTGATTGGCATGGAACTGAGGTTGCTGTAAAGAGGTTTCTAGATCAAGATATCTCTGGTGAATCACTTGAAGAATTCAAAAGTGAGGTCCAAATAATGAAAAGATTGAGGCACCCAAATGTTGTTCTCTTCATGGGAGCTGTAACTCGACCTCCAAATCTTTCAATTGTTACTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGAGGATGGCCCTGGATGCTGCTCGAGGAATGAATTATTTGCACAACTGCTCTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAATTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGAATGAAGAATAGTACTTTCCTTTCTTCCAGATCAACTGCAGGAACAGTAAGCTATCATAATTTTTATTTCCTTATTACAGTAGCTGTTTTAAAATCTGTCCATTGTGATTTATTTATTCTTTCATCCTCTTATTTGCATTATTGCATATTTTAA 2778 0.4194 MKNILKKLHIMSNQSEDAQGSTTPSKSNKSNDGSSSSPTAKKLSNWLHSVSNRQSPSPPSPNLARGERVEPSDTVSSGDLDIVSESVRRDSGSTTSRDPEVEEEYQIQLALELSAKEDPEAVQIEAVKQISLGSCDPDNTPAEVVAYRYWNYNALGYDDKISDGFYDLYGILTESTSTRMPSLIDLQETPTSEIVTWEAILVNRAADSNLLKLEQKALELVVNSRKDFEVVRDSNLVRKLAIIVADYMGGSVEDPESMSRAWRSLSYSLKATIGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYTGSDDVAMNFVKIDDGREYIVDLMAAPGTLIPSDATGSHIEYDESSFVATPSSRDLDSSHIASFSSGVGSSSEETSEFGTLDRGNRSKHFVYSGKESDVSRSTAGKEELKKSLNEFKNIPNVEKVRARESLSRPNYPYMHGRSPSWTEGISSPAVHRMKVKDVSQYMMDAAKENPNLAQKLHDVLLESGVVAPPNLFSEMYHEQLSSITEANLSTEEKDEYKQGSVQQETKVADNLGPPRFLPPLPHLKVHPKASPSSQMEHSKPVEGLGISLPLDTREASEQNISSQAEASQVKYAAAAAAAAVVASSMVVAVAKSGTDSNFDIPVAAAATATAAAVVATTAAVSKQYEQGSRSDGDTESTGYEPKVSGDGEHNALGANSEGERKSDRSVSNDSTKSDSALDDVAEYDIPWEEIKMGERIGLGSYGEVYRGDWHGTEVAVKRFLDQDISGESLEEFKSEVQIMKRLRHPNVVLFMGAVTRPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKNSTFLSSRSTAGTVSYHNFYFLITVAVLKSVHCDLFILSSSYLHYCIF. 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06980 925 MobiDBLite consensus disorder prediction 83 103 - -
Seca12g06980 925 MobiDBLite consensus disorder prediction 1 103 - -
Seca12g06980 925 MobiDBLite consensus disorder prediction 692 707 - -
Seca12g06980 925 Gene3D Transferase(Phosphotransferase) domain 1 808 912 - -
Seca12g06980 925 ProSitePatterns Protein kinases ATP-binding region signature. 735 756 IPR017441 GO:0005524
Seca12g06980 925 Gene3D Phosphorylase Kinase; domain 1 722 806 - -
Seca12g06980 925 ProSiteProfiles Protein kinase domain profile. 729 925 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06980 925 SMART serkin_6 729 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06980 925 Pfam Ethylene-responsive protein kinase Le-CTR1 142 345 - -
Seca12g06980 925 MobiDBLite consensus disorder prediction 548 579 - -
Seca12g06980 925 CDD STKc_MAP3K-like 735 893 - -
Seca12g06980 925 MobiDBLite consensus disorder prediction 661 716 - -
Seca12g06980 925 MobiDBLite consensus disorder prediction 377 396 - -
Seca12g06980 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672|GO:0006468
Seca12g06980 925 MobiDBLite consensus disorder prediction 8 61 - -
Seca12g06980 925 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 160 893 - -
Seca12g06980 925 MobiDBLite consensus disorder prediction 377 392 - -
Seca12g06980 925 Pfam Protein tyrosine and serine/threonine kinase 729 880 IPR001245 GO:0004672|GO:0006468
Seca12g06980 925 FunFam Serine/threonine-protein kinase isoform 1 720 807 - -
Seca12g06980 925 SUPERFAMILY Protein kinase-like (PK-like) 718 893 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06980 Seca-Chr12 161798564 161810141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06980 1 893 MAP Kinase Kinase Kinase AT1G73660 61.555 0.0 999
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Seca12g06980 EDR1 1.4e-76 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06980 - - gmx:100778331 1417.52