Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06979 ATGGACCCAATTTCGATCCCCCCTCCTCCGCCCGCCCTCACCACCGTCCCGTTCACCATAGAACCCGACAATCACGTACCTCCGGCCGCCAACGACATCCCCAACCTCACTGCTGCTACGAACCAGAACCACCCTCCTTATGCTGAGATGATATACAGAGCAATAGAGGCTCTGAAGGAGAAGGATGGGTCGAGCAAGAGAGCCATAGGAAAGTACATAGAGCAAGTCTACAAGGACAATCTTCCACCCACCCACTCCTCCTTGTTGACTCACAACCTCAAGCGCTTAAAGTCCACTGGTCTTCTCGTCATGGTCAAAAAATCTTACAAGCTCCCTTCCTCTCTCCCTCCACCTCCTATTCCTACTCCTAGATCTGATCTCACTCCCACCCCACAAACTCAAAGGGGCCGCGGTCGGCCCCCCAAGCCCAAACCCGATCCCCAGCAAAATGCTGAGCCCGTCTTTGTTGCGCTTGGCCTTGCCGATGACCCGGCACCACCACCACCTCCTACAACTGATCTCAACAAGAGAGGCCCGGGCCGTCCTCCAAAGATTGGAGTTGTCGGTGTGGGCCCGGCGGTGCCTGGTAGAAGAGGGCGCCCACCCGGGACGGCCAGATCTAGGTTGCCTAAGAGGCCTGGTCGTCCTCCCAAGCCCAAATCCGTGTCCGCAATCTCGAATGGGCTCAAGCGACGTCCTGGCCGTCCTCCCAAACTCCAATCGCAGCCCACTGTAATCCCCTTCGCCGCTCCTCTTGATGCCAGTGTGACACCGGCCGTACCCGTTGGATCTCCGAGGCCCAGAGGGCGGCCCAGGAAGAATGCCACTGCAGTGCCCGGTGTGGGAGCTCCCGCACCACCTATTGCTGTTCCGGTGATGAGGCAGGGTCGTCCTCCGAAGCTTCCTGTAGGGAGGCCCAAGAATTCCACTGGAAGGCCCGTGGGTCGTCCAAAGGGAGCAATAGCTGCTACTTCAGCGCAAAAGGTTGCTAATGAAGATCTAAAAAGGAAACTTGAATACTTTGTAAGTTGA 1032 0.5717 MDPISIPPPPPALTTVPFTIEPDNHVPPAANDIPNLTAATNQNHPPYAEMIYRAIEALKEKDGSSKRAIGKYIEQVYKDNLPPTHSSLLTHNLKRLKSTGLLVMVKKSYKLPSSLPPPPIPTPRSDLTPTPQTQRGRGRPPKPKPDPQQNAEPVFVALGLADDPAPPPPPTTDLNKRGPGRPPKIGVVGVGPAVPGRRGRPPGTARSRLPKRPGRPPKPKSVSAISNGLKRRPGRPPKLQSQPTVIPFAAPLDASVTPAVPVGSPRPRGRPRKNATAVPGVGAPAPPIAVPVMRQGRPPKLPVGRPKNSTGRPVGRPKGAIAATSAQKVANEDLKRKLEYFVS. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06979 343 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 43 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca12g06979 343 SMART h15plus2 41 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca12g06979 343 MobiDBLite consensus disorder prediction 162 176 - -
Seca12g06979 343 SUPERFAMILY "Winged helix" DNA-binding domain 41 118 IPR036390 -
Seca12g06979 343 PANTHER HISTONE H1 31 239 - -
Seca12g06979 343 Pfam linker histone H1 and H5 family 44 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca12g06979 343 SMART AT_hook_2 265 277 IPR017956 GO:0003677
Seca12g06979 343 SMART AT_hook_2 311 323 IPR017956 GO:0003677
Seca12g06979 343 SMART AT_hook_2 230 242 IPR017956 GO:0003677
Seca12g06979 343 SMART AT_hook_2 195 207 IPR017956 GO:0003677
Seca12g06979 343 SMART AT_hook_2 176 188 IPR017956 GO:0003677
Seca12g06979 343 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Seca12g06979 343 MobiDBLite consensus disorder prediction 110 327 - -
Seca12g06979 343 CDD H15 44 108 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca12g06979 343 PRINTS AT-hook-like domain signature 193 204 IPR017956 GO:0003677
Seca12g06979 343 PRINTS AT-hook-like domain signature 263 273 IPR017956 GO:0003677
Seca12g06979 343 PRINTS AT-hook-like domain signature 134 144 IPR017956 GO:0003677
Seca12g06979 343 FunFam Histone H1.2 40 120 - -
Seca12g06979 343 Gene3D - 40 119 IPR036388 -
Seca12g06979 343 MobiDBLite consensus disorder prediction 112 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06979 Seca-Chr12 161784220 161787356 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06979 50 116 Single Myb Histone (SMH) Gene Family AT1G49950 46.269 3.52e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06979 - - aprc:113856313 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g06979 12 161784220 161787356 Seca12g06979 12 161784220 161787356 ECH