Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g06978 ATGGGTGGTGGAGCAACAATCGCAGATGGGATTCGTCGCTTGTTTCAAAGACGTGCTCCTGTTACTTCTTCTTCTTCTAAGTCTCGTTCAGATGAAGACAATAACAATGCCAATAATGACCGCGTTTTCGTGAGAGATTTGCGGGCACAACTGGCATCTATTCCCACCAACGATCACGATCACGATCACCTAACCCATTTCCCCATTCACGATATCTCTTTCTCTCCCTTGAAGCCCATCAAAGTCCCTACTCACCTCTTCGGACCTTCTTCCATGGATCCTCACAAAAAGGGCGCGCCAGAAACAGAGTTTTTTACCGAGTATGGAGAGGCAAGTCAATACCAGATTCAAGAAGTCGTTGGAAAAGGAAGTTATGGTGTTGTGGGTTCTGCCATTGACACTCATACTGGTGAAAAGGTTGCCATCAAGAAAATTAATGATGTTTTTGAGCATGTTTCGGATGCCACACGGATCCTAAGAGAAATTAAACTGTTGAGGTTGCTACGGCATCCTGATATTGTAGAAATTAAGCATATTATGCTCCCTCCTTCGCGGCGAGAGTTCCAGGATATATATGTTGTGTTTGAGTTAATGGAATCTGATCTTCATCAAGTAATTAAGGCAAATGATGATCTTACTCCTGAACACCACCAATTTTTCTTGTACCAACTTCTTCGGGGCCTTAAATATATACATACAGCAAATGTGTTTCATCGTGATTTGAAGCCTAAAAATATCCTTGCTAATGCTGATTGCAAACTAAAGATATGTGATTTTGGGCTTGCTCGAGTTTCATTTAATGATGCTCCATCAGCTATATTCTGGACTGACTATGTTGCTACCCGGTGGTACCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAATATACCCCTGCAATTGATATTTGGAGCATTGGATGCATATTTGCAGAAATGATCACTGGGAAGCCATTGTTTCCTGGGAAAAATGTGGTGCACCAATTGGATCTCATGACTGATTTGCTTGGCACTCCTCCTCCTGAGTCCATTGCAAGGATTCGAAATGAGAAAGCTAGAAGGTATCTTAATAACATGCGAAAAAAGCAACCGGTTCCATTATCCCAGAAATTTCCAAATGCAGATCCTTTGGCTCTTCGTTTACTGGAGCGGCTACTTGCATTTGATCCTAAAGATCGTCCAACAGCTGAAGAGGCACTAGCTGATCCTTATTTCCACGGTTTAGCAAACGTGGATCGTGAACCATCTACTCAACCCATTTCAAAACTTGAATTTGAGTTTGAGAGAAGGAAATTGACCAAAGATGATGTTAGAGAGTTAATTTATCGAGAGATTTTGGAGTATCATCCCCAAATGCTCCAGGAGTATCTTCGCGGTGGAGAGCAAACCAGCTTCATGTATCCAAGTGGGGTTGATCGGTTCAAGCGACAGTTTGCACATCTTGAGGAGCATTATGGCAAAGGTGAACGAAGCACTCCATTGCAAAGACAACATGCCTCCTTACCTAGAGAGCGAGTTTGCACTTCCAAAGATGAAAATAATGAAAACAATGATTTTGAAAGGCCAACTGGATCAAATCTTCATAGTCCTCCAGGGCCAAATGGGACAAATGCTGGAAACTCAGATGCTCAAAATGGACCCTCCAATTCAAACTACAGTACACGTAGCTTGTTGAAGAGTGCCAGCATTAGTGCTTCAAAGTGTATAGGTGTGAAACAAAATAAAGATCCAGAGGAGCCAATTATGGAGGTCAATGATGAGGCAGTGGATGGATTGACAGATAACATTGCTGCCCTCCAAGCTTAG 1806 0.4247 MGGGATIADGIRRLFQRRAPVTSSSSKSRSDEDNNNANNDRVFVRDLRAQLASIPTNDHDHDHLTHFPIHDISFSPLKPIKVPTHLFGPSSMDPHKKGAPETEFFTEYGEASQYQIQEVVGKGSYGVVGSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFQDIYVVFELMESDLHQVIKANDDLTPEHHQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVSFNDAPSAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEMITGKPLFPGKNVVHQLDLMTDLLGTPPPESIARIRNEKARRYLNNMRKKQPVPLSQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFHGLANVDREPSTQPISKLEFEFERRKLTKDDVRELIYREILEYHPQMLQEYLRGGEQTSFMYPSGVDRFKRQFAHLEEHYGKGERSTPLQRQHASLPRERVCTSKDENNENNDFERPTGSNLHSPPGPNGTNAGNSDAQNGPSNSNYSTRSLLKSASISASKCIGVKQNKDPEEPIMEVNDEAVDGLTDNIAALQA. 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g06978 601 SUPERFAMILY Protein kinase-like (PK-like) 110 410 IPR011009 -
Seca12g06978 601 Pfam Protein kinase domain 114 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06978 601 ProSiteProfiles Protein kinase domain profile. 114 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g06978 601 ProSitePatterns Protein kinases ATP-binding region signature. 120 144 IPR017441 GO:0005524
Seca12g06978 601 Gene3D Transferase(Phosphotransferase) domain 1 200 428 - -
Seca12g06978 601 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 113 457 - -
Seca12g06978 601 FunFam Mitogen-activated protein kinase 200 428 - -
Seca12g06978 601 Gene3D Phosphorylase Kinase; domain 1 130 451 - -
Seca12g06978 601 FunFam Mitogen-activated protein kinase 103 208 - -
Seca12g06978 601 MobiDBLite consensus disorder prediction 18 32 - -
Seca12g06978 601 CDD STKc_TDY_MAPK 113 450 - -
Seca12g06978 601 MobiDBLite consensus disorder prediction 1 41 - -
Seca12g06978 601 FunFam Mitogen-activated protein kinase 429 451 - -
Seca12g06978 601 MobiDBLite consensus disorder prediction 503 518 - -
Seca12g06978 601 MobiDBLite consensus disorder prediction 519 555 - -
Seca12g06978 601 MobiDBLite consensus disorder prediction 484 555 - -
Seca12g06978 601 ProSitePatterns MAP kinase signature. 149 252 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca12g06978 601 SMART serkin_6 114 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g06978 Seca-Chr12 161771676 161776248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g06978 99 601 MAP Kinase Gene Family AT3G18040 82.970 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca12g06978 Pkinase 6.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g06978 - - gmx:100780831 988.793